| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_8942 |
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| Symbol | |
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| ID | 8340335 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | + |
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| Start bp | 10354613 |
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| End bp | 10356454 |
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| Gene Length | 1842 bp |
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| Protein Length | 613 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644962032 |
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| Product | conjugative transfer gene complex protein |
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| Protein accession | YP_003119596 |
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| Protein GI | 256398032 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.312755 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.363977 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTGGTG ACGTCACAGT CGCACGCCGG CCCGTGCTCG ACGGGCCCGC CGACTACGCG
ATCTTCGCTT TGATCGTCGC GGTCGTCGTG GCCGTGCCCG GCGTCTACGT GACCGGTGAG
CTCGCCGGAC TCATCACGCA CCTCACGCTG CCCAAGGCGA GCCTCGGACA GGTTCCGAAG
ATCATCAGGG CTCTGCCGCA CCACTGGGGC AACCCGAAGC TGGCTTGGCC GGCCAGCGCG
CGGCCGGACC TTCCCGGACC GGTCGGCTTC GGCATCGCCG CCGCCGTGGT GCTGACGGCT
ATGTGCTGGC TGGGGATCAT CGCGGCGAAG CGAGCGTGGA GGGGACGCTC GTATCGCGGC
TTCGCATCCC GCCAGCAGAT CGGCGTCTCC CTGTCCGAGA AGGCTGTGCT CAAGCGGGGC
CCGGTGGTGC GTCCCAGCGT GAAGGGAGTC AAGTTCACGC TTGTCGACGT CGGCGTTCGG
ATCGGCTGGG CCGACCCGGC GGGGATACCG GTGGCGATCT CGATCGAGGA CAGCGTGCTG
ATGCTGGCTC CCCCTCGTCA GGGCAAGTCG AGCCAGTGCA TCATCCCGTG GCTGCACGGC
TGGCGAGGCC CGGCGATCGT GACCAGCGCG CGGACCGATG TGCTGGAGAA CACCGCGACG
ATCCGCGCGG AACAGGGTCC TGTGCTGGTG ATGGCGCCGA CCGGCATGGT CGCGTGGCCG
GACAACGTTC AGTGGGCGCC GCTGGCCGAC TGCGAGGACT TCGACAAGGC GATTCTGCGG
GCCGAAGTGA TGGTCACTGT CGGCAAGAGC AGCGGCGACA ACACCGGCGG GGGCGACAAC
AAGTTCTTCG GCCTAGCCGC GACGAACCTC ATGGCTGGCT GGCTGCACGC CGCCGCGATC
TCAGGACGCC CGATGACCGA CGTGCTCCGT TGGGCTTTCA ACGAGGGCCT GGACGAACCT
GTCCACATCC TCGGCACCAA CCCGAAGGCT GCCCCCGATG TCGCGGAGAT GCTGGACAAC
CTCTATCGGG CACCAGCGGA CACGACCCGC TCCAATCTGT GGACGACCGT GCAGACCGCG
GTGGCGCCGC TGCTGTCCGT CGCCGCCCGC GCGACGTTCG CCCCGGAGGC CGGAGCGACC
TTCGACATCG AGGACTTCCT GCGGTCCAAC GGCACCATCT ACATCCTGGT GCCCAAGCAC
CGCGCGAAGA GTCTCGCACC GCTGGTCTCT GCTTTCTTCG ACGAGGTGAT TGAGACGGCC
AAGCGCCTGG CGGACGACTC GACCGGCGGC CGGCTCGATG CCCCGCTCGC GATCCTCGGC
GACGAGATCG CCAACGTGAG TCCGCTTCCG CAGCTGCCCG ACCTGATCTC CTACTCCGGC
GGCTCCGGGA TCTTCATGGT CATGGTGTTG CAGGACATGG CTCAGGCGAT CGACGGCTGG
GGGCCGAACG GCGCGGCGAA GATCTGGGGG GCAGCGACGG TGAAGATCGC GCTCGGCGGT
CTGTCGGGCG ACGAACTCGA CGACCTGTCC AAGCTCGGCG GTGAGTACCG CGAATCGCTG
ACCACCCACC AGCACGGAAG CAGCGGCTAC AGCATGCAGA CCACTCTCCT GGACAGGAAG
ACAATCTCGC CGGAGCAGAT CCGCACTCTG TCCTCGGAAC GCCGGGAGGC ACTGGTCATC
CACGCTACGA CACCGGCCGT GAAGGTGCGC ATGCAGCGTC ACTACGAAGG CCCCCATGCC
GCCGCGTTCG CGACGGCCGT GAAGGAGGCC CGCGCCATCA TCACCGAAGA ACAGGCTCGC
CGCGGAAGCC CCGAGACTGC GCAGAAGCAG GAGGCGGCAT GA
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| Protein sequence | MAGDVTVARR PVLDGPADYA IFALIVAVVV AVPGVYVTGE LAGLITHLTL PKASLGQVPK
IIRALPHHWG NPKLAWPASA RPDLPGPVGF GIAAAVVLTA MCWLGIIAAK RAWRGRSYRG
FASRQQIGVS LSEKAVLKRG PVVRPSVKGV KFTLVDVGVR IGWADPAGIP VAISIEDSVL
MLAPPRQGKS SQCIIPWLHG WRGPAIVTSA RTDVLENTAT IRAEQGPVLV MAPTGMVAWP
DNVQWAPLAD CEDFDKAILR AEVMVTVGKS SGDNTGGGDN KFFGLAATNL MAGWLHAAAI
SGRPMTDVLR WAFNEGLDEP VHILGTNPKA APDVAEMLDN LYRAPADTTR SNLWTTVQTA
VAPLLSVAAR ATFAPEAGAT FDIEDFLRSN GTIYILVPKH RAKSLAPLVS AFFDEVIETA
KRLADDSTGG RLDAPLAILG DEIANVSPLP QLPDLISYSG GSGIFMVMVL QDMAQAIDGW
GPNGAAKIWG AATVKIALGG LSGDELDDLS KLGGEYRESL TTHQHGSSGY SMQTTLLDRK
TISPEQIRTL SSERREALVI HATTPAVKVR MQRHYEGPHA AAFATAVKEA RAIITEEQAR
RGSPETAQKQ EAA
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