| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_8624 |
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| Symbol | |
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| ID | 8340006 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | + |
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| Start bp | 9996041 |
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| End bp | 10000627 |
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| Gene Length | 4587 bp |
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| Protein Length | 1528 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644961706 |
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| Product | YD repeat protein |
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| Protein accession | YP_003119281 |
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| Protein GI | 256397717 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.165231 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.776649 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCGTC CGTCTGGTTG GGACATTCTT GGTTTGGATG GGGATCCGAC GCCTGGTGTG
GTGGAGTCGG TGCAGGCGTT GGCGAAGGAG TTCGGGGACT TCGCCCACGA CGTGGAGGCG
GCGTATCGGA GCCTGAACAG CTTCGGTTCG GACACTGCGG CGCTGGAATG GGTGGGTCAG
ACCGCTGAGG CGTTCAAGGG CAAATATGGT CCCCTGCCCG GTCGCCTTCA GAAGCTGTAC
ACGTCCTACA GCGAGGCCTC CGATGCGCTT TCGGCGTATT GGCCGTTGTT GCAGGCAGCG
CAGACGAAAG CCGACACGGC GCTGCGTCAG GCTCAGGATG CGCATGCCGA TCTGCAGCGT
GCCACCACCA GCGCCACCAA CGCGGCGACG GATCTGAAGA CCGCGCAGCA GAACCACGCC
GCGACACCGA ACCCGCAAGC GGTTACCGAC GCGCAGACCG CGCATGACAC CGCACAAACG
AACCTGAACA ACGCCAAGGC GCAGATGGCA GCACTGACCG AGCAGGCCAA CGACGCCTAC
AACGACCGCA TCAACGCCGC CAAAACCTGT GGCAGCGCCC TGCATCACGC CCAATCCGAC
GGCATCCACA ACAAGTCCTG GTGGCAGCAC GTCGGCGAGG ACCTGTCCAC ATGGGGCGGC
GAGATCGGCA AAATCGCCGG CGAGCTCGCC CCCGTCCTGG ACATCATCGC CCTCGCGACC
TCCTGGATCC CCGGCGTCGA CGTCGTCACC GCAGCCCTAG CCGAAGCCGA CAACATCGTC
GCCCTAGCCG GCACCGCCAT GGCCACCATC GGCGACGCCA TGCAAGGCCA CTGGGGCGAC
GCCCTCCTCG GCGCCGGCAT GCTCGCCCTC ACCTTCGTCG GCGCCCGGGC CTTCGGCTCG
GAAGCGGAAG CGGTCGAAGG CGAGGCCGGA GGTCTTGAGG GGGAGGCTGG TGCGCTTGAA
GGCGAAGAAG GCGCCGCAGC CCGTACCGCT GAGGGCAACG AACCCGCGAA CATCGCAGAC
GACCCTGTCG ACGTGGTATC GGGCTGGATG CTCACGGATG CCTGCGACCT GGAACTGCCG
GGTGTACTAC CCGTTGTGTT GCGGCGCGCG TACGCCTCCG GGTACACCAC CGGCCGCCTG
TTCGGCCCCG GCTGGTCGTC GACTTTGGAT CAGCGTCTGT CGATCAACGA GGCGGGAATT
CACTTCGCCG GCGACGATGC CCAACGCCTT GACTACTCGA TCCCCAACGG CGATGAGGAG
CTGCTGCCCG AGCGCGGGAG CCGCTGGCCC TTGATATGGG ACCGTGAGCT GGACGAGATC
CGCATCACCG ACCCGTGGTC CGGGCAGACC CGCCACTTCT CGACGGTACA TTTCAATAGC
GAACTCGGGC AGATCCGCGA CCTGACCGCG ATATCCGACC GCAACGGCAA CCGAATCACC
GTCCTGCGTG ACGAGCACGG CACCCCGACC GGGCTCGAAC ACCCAGCCTA CCGCGTCGCT
GTCGACACGA TCGCGAGCGC GGCCGGCCCA CGAGTCAGCG GCCTGCGATT GCTGGGCGCT
CGTGAGACCG GCTCGGACAT GGTCATGAAG CGCTTCTCCT ATGACGGTCA AGGCCGCTTA
ACTGGTGTGA TCAATTCGTC CGACGTGCCG TTCAGTTACG AGTGGAACGA CACGGACCGC
ATCTCGGCTT GGACCGACCA GGCCGGTTAC CGCTATGGCT ACCACTACGA CGCGATAGGC
CGGGTCGTCC GCGGCCAGGG CCAGTTCCTC GCTGGATCGT TCACCTACGA CCCAGCGCAC
CGCACGACTG TCCATACCAA TTCATTGGGT CACGTGACCA CGTTCGTCTA CGACGAAAAC
GGCCACGTAT GCTCCGAGAC TGATGCGCTG GGTCACACCA CACTTACCGA GACCGACCGC
TACGGCATGA TCCTGTCCCG GACCGACGCC CTCGGTACCC GCACCACGCT GGTCAGGGAC
GAAGCGGGCA ACGTCCGAAG GCTCGTCGCG ACTGATGGCG CGACTGCCGA GCTCGAGTAC
AACCACCTCC ACCAGGTCGT CGCAGCCACC GGGCGGGGCG GCGCGACTTG GCGACGTGCC
CATGACGACC GGGGCAACCT GGTGTCCGCG ACCGACCCGG CCGGGGGTGT CACCGAGTTC
GAATACACCG CCGAGGGCGT GCTAGCCGCG ACCACGGACC CGTTGGGCGC CGTAACCCGG
TTCACAACGG ACGCCGCTGG CTTGCCCGTA ACGGTTCTGG ACGCCGTCGG CAGTCTGACG
CGCGTCGAGC GAGACTTCGC CGGCCGGGTG GTGCGATTGA CCGACCCGAT GGGTGCTGTG
ACCGCCTTCG AGTGGAACGC CGAGGGCCTG CCAGTATCCA GGACGCTGCC GGACGGCGCC
CGAACCACCT GGCGGCACGA CGATGGCGGT CGTCTGCTGG AAGTCGTTGA CGCCATCGGC
GCGACTACAA GGTTCGAACC GGGCCCCATG GAGACGTTGA CCGCTCGCAC CGGTCCGGAC
GGCGTGCGGC ACAACTTCAC CTACGACAGC GAACTGAAGC TCGTCGCGGT CACCAATCCT
CATGGTGCGG CCTGGACGTA CACCTACGAC GCAGCCGGGC GCCTGACCGG CGAGAGCGAC
TTCATCGGCC GCCGTCTCGG TTACGAATAT GACGTCGCGG GACGCCTGTG CGCGCGGATC
ACTGGAACCG GTCAACGTCT GACCCTCGAT CGCGACGCCA CAGGCCGAAT CGTGGCGCGC
CACACGCCGG AAGGCGACTA CGGCTACACC TACGACAGCG CCGGACGCCT CGTGGTTGCC
ACCGGCCCGA ACTCCGAGCT GTCCTACGAA TACGACACAC TGGGCCGACT CCTCGCCACC
ACCACTGACG ACCGCACAAT GCGGTACAGC TACGACCTGG CTGGCCGACT CATCCGCCGC
ACGACTGCCT CAGGCGTCGA GTCGACATGG ACATACGACT CGGCTGGCCG TGCGGTCGGG
CTCGATACCG GCGGCGACCG GCTGGAGTTC GGATTCGATG CGTCGGGCCG GGAGATCGAG
CGGCTCATCG GCTCCGAGGT CTGGCTCACT CGGAGCTATG ACGTGGTCGG TCGGCCGATC
GCCCAGAGCG TCGGCCGCGG CAGACGCCAC CACGACCAGG CGGCCCAGAC GGACCTCATA
ATCGCAGGCA GCAGAACTGG GAAAGCTGTA CAGGAAGTTC TCCAGCGCAG CTGGGTCTGG
CGGCAGGACG GCGTACCCGA AGAAATCAGG GACAGCCTGC GCGGCACCAG TCGCATCGCT
TCCGATGCCG CCGGGCGCGT CACCGCAATC AGCGCCCACA GTTGGAGCGA GTCCTACGCG
TATGACGCGT TCGGCAACCT CACCGTCCAG GACGATGCCG CGGGCCCACT AAACCTCCCT
GCTACCGCTG CGGGAGAGGG AGCCGGTTTC GCAACCAGAA CCCTTATTCG CCGCTCGGCC
CGAGCCCGGT ACGAGCACGA CCAGGCAGGC CGGCTGACCA GGAGCGTACG TCGGACGCTT
GATGGGCGCA GCAAGGTAAC CCAGTACGTC TGGGACTCCG AAGACCGGCT GGTTCACGTG
ATCACCCCGG AAAACGGCAC CTGGCACTAC TCCTACGATC CGCTCGGGCG ACGCACCGCG
AAGACCAGGT TCGCCGACGA TGGAACGGTG GTCGATCGGG TCACCTTCTT GTGGGACGGC
CCGCGCCTGG CTGAGCAGAG CGTACAAGGC CCCGAAAGTT TCACCGTGAC CCTCACCTGG
GACTACGACC CGGGTACGTT CCGCCCTGCC ACACAACGCC GCCGCAACCG CCTGGGCGAC
GCCGACCAGA CCGTCATCGA CGAGGCCTTC CACGCCATCG TCGCCGACCT GGTCGGCTCG
CCCACCGAGC TCGTCACCCC CGACGGGCGT GTCGTCTGGC ACACCACCAC GTCGTTGTGG
GGGCGCACTA TAGGCACTTC CGCCGAATCC GGTGTGGACT GCCCGCTGCG CTTTCCCGGT
CAATATCACG ACGACGAATC CGGCCTGCAC TACAACCTGA ACCGCTACTA CGACTCGGAA
ACCGCGGCAT ACCTGACCCC GGACCCGCTG GGGCTGGTAC CCGCTCCCAA CGACCACGCC
TATGTGCCGA ATCCTCTGAC CGTCTCCGAC CCGCTTGGGC TCAGCTACGA AGGTCCCAAC
GGGCAGACGA TGTATCCGAA CAACATGCCC GGCACCTTGG ACACCGAACT TGCCCAGGCT
GACCGTCTCG GAGTCGTGGT ATCTTCGCCC GGTACGTCCG AATTCGACTC CGCCATCGCT
TCAGGAACAG TGAAATGGGC CGTGAAGGAC GACGGAAGCA TCGTCGTGAT GCCGAAGTTC
GTAAACGGGC AGGAGATATC CCACTCGGTC CTGACCCGCG GGGCGTCTGT TCAAGCCGCT
GGAGAAGCCG AGATAGCCGG TTCAGGAGCC GATGGCTACT TCGGCCTCGA TATCAACGAC
CACAGCGGAC ACTTCTTCGA ACCTGGATGG AATGTGGCCA GTATCGGTAA AGACGCGTTC
TCGGGAGCGG GGGTCCTGTT CCCATGA
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| Protein sequence | MARPSGWDIL GLDGDPTPGV VESVQALAKE FGDFAHDVEA AYRSLNSFGS DTAALEWVGQ
TAEAFKGKYG PLPGRLQKLY TSYSEASDAL SAYWPLLQAA QTKADTALRQ AQDAHADLQR
ATTSATNAAT DLKTAQQNHA ATPNPQAVTD AQTAHDTAQT NLNNAKAQMA ALTEQANDAY
NDRINAAKTC GSALHHAQSD GIHNKSWWQH VGEDLSTWGG EIGKIAGELA PVLDIIALAT
SWIPGVDVVT AALAEADNIV ALAGTAMATI GDAMQGHWGD ALLGAGMLAL TFVGARAFGS
EAEAVEGEAG GLEGEAGALE GEEGAAARTA EGNEPANIAD DPVDVVSGWM LTDACDLELP
GVLPVVLRRA YASGYTTGRL FGPGWSSTLD QRLSINEAGI HFAGDDAQRL DYSIPNGDEE
LLPERGSRWP LIWDRELDEI RITDPWSGQT RHFSTVHFNS ELGQIRDLTA ISDRNGNRIT
VLRDEHGTPT GLEHPAYRVA VDTIASAAGP RVSGLRLLGA RETGSDMVMK RFSYDGQGRL
TGVINSSDVP FSYEWNDTDR ISAWTDQAGY RYGYHYDAIG RVVRGQGQFL AGSFTYDPAH
RTTVHTNSLG HVTTFVYDEN GHVCSETDAL GHTTLTETDR YGMILSRTDA LGTRTTLVRD
EAGNVRRLVA TDGATAELEY NHLHQVVAAT GRGGATWRRA HDDRGNLVSA TDPAGGVTEF
EYTAEGVLAA TTDPLGAVTR FTTDAAGLPV TVLDAVGSLT RVERDFAGRV VRLTDPMGAV
TAFEWNAEGL PVSRTLPDGA RTTWRHDDGG RLLEVVDAIG ATTRFEPGPM ETLTARTGPD
GVRHNFTYDS ELKLVAVTNP HGAAWTYTYD AAGRLTGESD FIGRRLGYEY DVAGRLCARI
TGTGQRLTLD RDATGRIVAR HTPEGDYGYT YDSAGRLVVA TGPNSELSYE YDTLGRLLAT
TTDDRTMRYS YDLAGRLIRR TTASGVESTW TYDSAGRAVG LDTGGDRLEF GFDASGREIE
RLIGSEVWLT RSYDVVGRPI AQSVGRGRRH HDQAAQTDLI IAGSRTGKAV QEVLQRSWVW
RQDGVPEEIR DSLRGTSRIA SDAAGRVTAI SAHSWSESYA YDAFGNLTVQ DDAAGPLNLP
ATAAGEGAGF ATRTLIRRSA RARYEHDQAG RLTRSVRRTL DGRSKVTQYV WDSEDRLVHV
ITPENGTWHY SYDPLGRRTA KTRFADDGTV VDRVTFLWDG PRLAEQSVQG PESFTVTLTW
DYDPGTFRPA TQRRRNRLGD ADQTVIDEAF HAIVADLVGS PTELVTPDGR VVWHTTTSLW
GRTIGTSAES GVDCPLRFPG QYHDDESGLH YNLNRYYDSE TAAYLTPDPL GLVPAPNDHA
YVPNPLTVSD PLGLSYEGPN GQTMYPNNMP GTLDTELAQA DRLGVVVSSP GTSEFDSAIA
SGTVKWAVKD DGSIVVMPKF VNGQEISHSV LTRGASVQAA GEAEIAGSGA DGYFGLDIND
HSGHFFEPGW NVASIGKDAF SGAGVLFP
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