| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_8580 |
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| Symbol | |
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| ID | 8339962 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | + |
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| Start bp | 9950773 |
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| End bp | 9953151 |
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| Gene Length | 2379 bp |
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| Protein Length | 792 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644961665 |
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| Product | type IV secretory pathway VirD4 protein-like protein |
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| Protein accession | YP_003119240 |
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| Protein GI | 256397676 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0433] Predicted ATPase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.384634 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.281416 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGCGC CGAACTCGTC CCTCCTCGGC CGGTGGCTGC TGCACCCAAC CGATCTCTTC
TCCCTAGCCC TGGCGTCGGC CGAGCAGAGC GTCTGTGACT GGTGGCTCAT CGGCGTCCCC
ATGCTGGGCA CCGCTTCGTG TTCAGCGCTC GCGTGCTGGT ACCTCAAGCA GGCGCGGCGT
CATCGCGCGG TGACGGACGC GTCGGCGCGA TACGTCATCC TCAAGCTGCC GCCCGAGGTC
GAGCCGGGAT GCGCCGAGGC GTTCTGGACC CACCTTCATG CACTGCTTCG TCCCAGGTGG
CAAGGGATCC TGGACAGGCA ACCCCATCTG GCTTTCGAGT TCCTCTGGAG CAGCGAAGGC
CTCAGCCTCG GCGTCTGGGT TCCGCCTTCG ATCTCCGCTG ACGTCATGGC CACGGCCGCC
GAAGCCGCGT GGCCTGGCGT CTACGCACAG ATCGTCTCGC CAGCTCCGAT CCCGATCACT
GCCCAGGCTT CGACGTGCGG CCGGCTTCGG TTGGCCAAGC CTTCCTATCT GCCGCTGAAG
GTCAAGCACA CGTCCGATCC GCTCCGCCCG CTGCTGCAAG CCGGCCGAAA GCTGCGGCCT
TCCGAAAGCG CGTGCGTCCA GATCCTCGCC CGACCCGCTG CGGGTCGGCG GGTGCGGCAG
CTGCAATTCC AGCTCAACCG GTTCCGCGCA CGCACGTTTC GTGACCTGGG CACGATGACC
CCGGTCAGCA CGTTTCTCGA CGAGTGGACC CCCAACGCGA AGCCGCAGAC GGGGCCGGCT
GATCCTGCGC ACGCCGCAGC ACTTCGATCG GCCGTCACGA AGACGGTCGG ACCTCTGTGG
GCGGTAGAGA TCCGATACGC CGCAGGCACC GAATCAACCG GGCCCGATGC AGACAAGCGG
ACCCGCAGCA TCACCGAGAG CCTGGCCTCC GCCTTCGGTG TCTTCGCAGA ACGGAACTCG
TGGGCCCGTC ACCGCCTGAC GGGCCCACCG TCCGCGCTCG CGTCGCGCCG GATGGGCCGG
GGTGATCTTC TTACCGTCGC CGAACTGGCA GGCATCGCGC ATCTCCCGCT GGATGCCGAC
GTCGTCGGCG TGCCTCGTGC CGGTGCGCGT TCGATCGCCC CGCCTCCGGA GATCCCGGCG
CTCTCCCACG GCCACAAGAT CCTCGGAGAC GCGGACACCT CGCCGATCCG GCCAGTCAGC
GTCGCGGTCC CGGACGCCCG CCAGCACTTC CACATCATGG GCGCGACCAA CTCCGGCAAG
TCGACGCTGA TGGCGCGCAT GATCCTCGAC GATGTGGACG CCCGCCGGGG CGTCCTCGTC
CTGGACCCGA AGGGTGACTT GGTCGGGGAC CTCCTCGACC GGCTCCCGCT ATCGGCGGCT
GACCGCCTGG TCCTGATCGA CCCGACGGAC TCCGGGCCGC CGCCTTGTCT CAACATCCTG
GCGCAGGGCG ACCCCGAACT GACCGTGGAC AACCTCGTGG GGATCTTCCG GCGGCTGTTC
GCGTCCTCAT GGGGTCCACG CACCGACGAC GTCCTACGCG CCGCATGCCT GACCCTCCTC
GCTACCGCAC GAGACCGGCC GCCGACGCTC GCGGACGTCT CCCAGCTGCT GAGCGACAAA
GTCTTCCGCA CCGCACGAAC AGCCAGCCTC GCCGAGGGCG ATCACAGGAT GCTGGATCAC
TTCTGGACCG GCTTCGCCGA TCTGTCGGCC CAGTCCCAGG CCGCCATCAC GGCGCCGCTC
CAGAATAAGC TCCGCGCCTT CCTGCTCCGG CGGTTCGTGG CCGACGTCAT TGCGCAGCCG
CGTTCAACGA TTGACCTCGG TCGGGTCCTG GACGGCGGGA TCTGCCTAGT CAGGCTACCC
AAAGGCGTGC TCGGCGACGA CACGATGCGT CTACTCGGCT CGTTCATCCT CGCCGCCGCA
TGGCACGCAA CGACCGCTCG TGCGGGCCGA CCCGAGCAAG CGCGCCCGGA CGCCTCGGTC
TACCTCGACG AAGCCCACAA CTTCCTGAAC CTGCCCTACA GCTTGGAGGA CATGTTGGCC
GAAGCTCGCG CCTACCGGGT CTCCTTCACC CTCGCCCACC AGAACCTCGC CCAGCTCCCG
ACAGATCTCG CCGAAGGCAT CTCGGCGAAC GCCCGGAACA AGGTCTTCTT CACCTGCTCG
CCGCAGGACG CGCGCGCACT CGCAGCGCAC GTCGGCCCTC TGCTCGGCGA GCACGACCTG
GCCCACCTCG ACGCCTTCCA AGCCGCGGCT CGGCTGACGG CGAAGAGCGC GCACGTCCGA
GCCTTCACGA TGCGGACCCG ACCAGCGCAG CCGGCTATCC CAGGACGCGC CGACGCGATC
CGCGCCGCCG TCCACGCTGC TGCACGGGGC CGCGCGTGA
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| Protein sequence | MSAPNSSLLG RWLLHPTDLF SLALASAEQS VCDWWLIGVP MLGTASCSAL ACWYLKQARR
HRAVTDASAR YVILKLPPEV EPGCAEAFWT HLHALLRPRW QGILDRQPHL AFEFLWSSEG
LSLGVWVPPS ISADVMATAA EAAWPGVYAQ IVSPAPIPIT AQASTCGRLR LAKPSYLPLK
VKHTSDPLRP LLQAGRKLRP SESACVQILA RPAAGRRVRQ LQFQLNRFRA RTFRDLGTMT
PVSTFLDEWT PNAKPQTGPA DPAHAAALRS AVTKTVGPLW AVEIRYAAGT ESTGPDADKR
TRSITESLAS AFGVFAERNS WARHRLTGPP SALASRRMGR GDLLTVAELA GIAHLPLDAD
VVGVPRAGAR SIAPPPEIPA LSHGHKILGD ADTSPIRPVS VAVPDARQHF HIMGATNSGK
STLMARMILD DVDARRGVLV LDPKGDLVGD LLDRLPLSAA DRLVLIDPTD SGPPPCLNIL
AQGDPELTVD NLVGIFRRLF ASSWGPRTDD VLRAACLTLL ATARDRPPTL ADVSQLLSDK
VFRTARTASL AEGDHRMLDH FWTGFADLSA QSQAAITAPL QNKLRAFLLR RFVADVIAQP
RSTIDLGRVL DGGICLVRLP KGVLGDDTMR LLGSFILAAA WHATTARAGR PEQARPDASV
YLDEAHNFLN LPYSLEDMLA EARAYRVSFT LAHQNLAQLP TDLAEGISAN ARNKVFFTCS
PQDARALAAH VGPLLGEHDL AHLDAFQAAA RLTAKSAHVR AFTMRTRPAQ PAIPGRADAI
RAAVHAAARG RA
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