Gene Caci_8504 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_8504 
Symbol 
ID8339884 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand+ 
Start bp9864173 
End bp9864844 
Gene Length672 bp 
Protein Length223 aa 
Translation table11 
GC content67% 
IMG OID644961591 
Productpolysaccharide deacetylase 
Protein accessionYP_003119168 
Protein GI256397604 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0726] Predicted xylanase/chitin deacetylase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.331612 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.0143221 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGCGC CAGATTTGAG GAACATCTCG TTCCACGGCA TAGGAACCCC TAACGGCCCA 
GAGCGCGAAC CCGACGAACA CCGCTACTGG GTGACGAAGT CGGCGTTCCT GCGCGTCCTC 
GACCTCTGCG CCGAACACCC CAACATCCGC ATCAGCTTCG ACGACGGCAA CGCCTCCGAC 
GCCGAGATAG CCCTCCCAGC CCTGAAAGAA CGAGGCCTCA CCGCCGACTT CTTCCCCATA 
GCCGACCGCC TCGGCACCCC CGACAACCTC AGCCCCGAAG CCCTCCAAGC CCTCTCCGCC 
GCCGGCATGA CCATCGGCAC CCACGGCGCA GCCCACCGCC CCTGGACCAA GGCACTGGCA 
ACAGACCAGC ACCTGGAACT CCAAGACGCC CGCACCCGCA TCGCCGAAGC AACAGGCCAA 
CCCGTCGACA CAGCCGCCTG CCCCTTCGGC GCCTACGACC GCAAAGTCCT CCAAGCCCTC 
CGCACAGCCG GCTACCGCAC CGTCTTCACC AGCGACGCCC GCCCAGCCCA CCCCGGCAAC 
TGGCTCCAAC CCCGCTACAG CGTCGAAGCC GACGACACAC CGGACTCAGT CCGCGCACGC 
ATGCTCGCAC CACGCTCGAC GAAGGAGCGC GCGGTGGATC GCGCGGTACT GATGGCGAAG 
GCGTGGCGAT GA
 
Protein sequence
MSAPDLRNIS FHGIGTPNGP EREPDEHRYW VTKSAFLRVL DLCAEHPNIR ISFDDGNASD 
AEIALPALKE RGLTADFFPI ADRLGTPDNL SPEALQALSA AGMTIGTHGA AHRPWTKALA 
TDQHLELQDA RTRIAEATGQ PVDTAACPFG AYDRKVLQAL RTAGYRTVFT SDARPAHPGN 
WLQPRYSVEA DDTPDSVRAR MLAPRSTKER AVDRAVLMAK AWR