| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_8308 |
|---|
| Symbol | |
|---|
| ID | 8339687 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 9627095 |
|---|
| End bp | 9628780 |
|---|
| Gene Length | 1686 bp |
|---|
| Protein Length | 561 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644961394 |
|---|
| Product | ABC-type branched-chain amino acid transport systems periplasmic component-like protein |
|---|
| Protein accession | YP_003118972 |
|---|
| Protein GI | 256397408 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.643873 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCTCCG CGCGCTCCCC GCGATTCCGT GACCGCCATA GCCGCTCCCA TAGCCGCCGC
CCCCATCTCC ACCCCCGCCT CCGCTCCAGT CCCCGTCCCC TAGCCGCCGC GATCACCATC
GCGACCCTGT CGCTGTCCCT CGGCGCGTGC GGCGCACGCC TGTCCGCCGA CCAGAAAGCC
GCGGCCATCG CCTACGGCCA AGGCAACGCC CACGGCGACG GCTCGCAAAG CGCTGACGGC
TCCCAGAGCT CCGGCGCCAA CGGCACCACC GGCGGAACGA CCGGCGGCAC CACCGGAGGG
ACAACCGGGG GCAGCTCCGG CGGCAGCGTG TCCGGCGGGA CCACCGGCGG ATCCTCCGGC
GGCGCGGTCG GCGGCACCAG CAGCGGCGGC GGAACCTCCG GCGGCACCAC CGGAGGAAAG
AGCACAGGCG GAACAACCGG CGGCAAGACG TCTGGCGGCA CCACCGGTGG CACGGGAGGC
GGGAGCGGCG GCGGCTCAGG AGGGTCCGGC GGTCCGGGCT CCGACTCCTG CGTCGGCACC
GCCACCGGCT CCAGCGCCAC CGGCGTGACG GCGAACAGCA TCAGCCTCGG CAACGCCAGC
GACCTGTCCG GCCCGATCGG CGGCCTGTTC AGCTCGGCGC CGCAAGCCGT CCAGGCCTAC
GTGGCCTACT TCAACGCCAC GCACCCGACC GGCATCTGCG GCCGCAAGCT CACCGTCCAC
TCCTACGACT CGCAGACCTC CGACGCCGGC GACAACCAGC AGACGCTGAC CGCCTGCCAG
TCCGATTTCG CCCTGGTCGG CTCGGTCTCC GCCTTCGACT CCGGCGGCGC GGCGTCCGAC
GCCAGCTGCG GTATCCCGGA CCTGCAAGCC GTGAGCACCA CCCGAGCGCG GCAGACCTGC
GCGGTCTGTT TCGGCACGGA TTCGCAACAG CTGCCGCTGG TCCCGCAGGT GCAACCGGAC
TTCTGGAAAA AGCAGTTCCC GGGTGCGAGC GCCAAGGCGG CGTTCCTCTA CGTCGACACC
GGAACCACTG CGCAACAAGC GAAATCCTGG GAGCAGGCCT ATGCCAAGGA CGGCTTCACC
TGGGTCCTGA ACCAGCCGAT CGGCGTCTCG GAGTCGAACT ACACGCCCTA CGTCGTGAAG
ATGCAGCAGG CCGGCGTGCA GTACGTGCAG TTCCTCGGCG CGTATCAGGA GGCTTCGACC
CTCGCGCAAG CCATGCAGCA GCAGGGTTTC ACGCCGAAGG TCTTCGTCCT GGACCCGACC
GGCTACGACC CGAACTACAT CCAGCAGACC GGCGGGGCGG CGAAGAACAC CTTCGTCTTC
AGCAACGCGG CGATGTTCGA GGAAGCCGGT TCGAACCCTG AATTGCAGCT CTACACCAAG
TGGCTGCACC AGGTCGCGCC GGGCGCGACC CCCACCTACT TCGGGATGTT CGCCTGGTCC
TCGGCCGAGC TGTTCACCCG GCTGGCCAAC CAGATCGGGC CGAACCTCAC CCGCCCAGCG
ATGGTGAAGG CGCTGGCCGG CGTGCACAAC TACACCGGCA ACGGGATGTT CGCGCCGCAG
GACGTCGGCG GCAAGAGCAC CTCTCCGTGC GCACTGTTCA TGCAGTACAC CGGGTCGGCC
TGGAAACGGG TCTCCCCGGG CTCGGGCTGG AGCTGCGGGA ACCTCATCAA CTCCGGCGTC
AGCTGA
|
|---|
| Protein sequence | MTSARSPRFR DRHSRSHSRR PHLHPRLRSS PRPLAAAITI ATLSLSLGAC GARLSADQKA
AAIAYGQGNA HGDGSQSADG SQSSGANGTT GGTTGGTTGG TTGGSSGGSV SGGTTGGSSG
GAVGGTSSGG GTSGGTTGGK STGGTTGGKT SGGTTGGTGG GSGGGSGGSG GPGSDSCVGT
ATGSSATGVT ANSISLGNAS DLSGPIGGLF SSAPQAVQAY VAYFNATHPT GICGRKLTVH
SYDSQTSDAG DNQQTLTACQ SDFALVGSVS AFDSGGAASD ASCGIPDLQA VSTTRARQTC
AVCFGTDSQQ LPLVPQVQPD FWKKQFPGAS AKAAFLYVDT GTTAQQAKSW EQAYAKDGFT
WVLNQPIGVS ESNYTPYVVK MQQAGVQYVQ FLGAYQEAST LAQAMQQQGF TPKVFVLDPT
GYDPNYIQQT GGAAKNTFVF SNAAMFEEAG SNPELQLYTK WLHQVAPGAT PTYFGMFAWS
SAELFTRLAN QIGPNLTRPA MVKALAGVHN YTGNGMFAPQ DVGGKSTSPC ALFMQYTGSA
WKRVSPGSGW SCGNLINSGV S
|
|---|
| |