| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_7330 |
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| Symbol | |
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| ID | 8338699 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | + |
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| Start bp | 8510912 |
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| End bp | 8513071 |
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| Gene Length | 2160 bp |
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| Protein Length | 719 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644960412 |
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| Product | type IV secretory pathway VirD4 components-like protein |
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| Protein accession | YP_003118000 |
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| Protein GI | 256396436 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000633696 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00000000626768 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGACCGCGT GGGCGTGGTA CGAGGCCTTC CCGCCGCGCG GCATGACGCT GGAAGCCTCC
ACGAACGTCA TGCGGGCGCT CGCCGGACGG CCGCGGTTCG GATTGCTCGG GCTGGTGCCG
CTGGCTGTCT TCGAGCTCTG GCTGTATCCG GAACGCGTGC GCTGGTTGGT CGGCATGGAT
GAGCAGATCA GTGACCGGCT ACCGGGGGAA CTCATGGCGC AGTGCCCGGA ACTGGTACTG
GTACACACCG ACAATCCGAA GCGTCCGGCA GTCGTTGCCG GCCGTGAGGT TCGCTTCAAG
AGCCTGGCGT ATCCCATTCG CGGTGACGTC GCCGAAGGAG TCACCGCGGC GCTGCTGCGT
ATCCGTCAGG GACTGCGCCC TGGTGAAGCC GTCGCACTCC AGTTCGTCAT CGGGCCCGGG
CAGTTCTTTG CGGTTTTGCC ACAGCGGCGG ACGCCGTTGG ATGTCCTGGG CTTTACCAGC
CCACCGGAGC CAGACAGCAA CGACCGTCGA GCATTCAAGC GCAAGGTTTC CGAGCCCTTG
TTCGCCATCC GCGGCCGAAC GGGGGCGGTA GCAAAGGACC CTCGTCGCGC CGCTGGGCTG
ACCCGACCGG TGTTCTCGGC CCTGGCTTTG GCCAACGACC GGCACGGCCG CGTCCAGGTC
TCGGCGCAGT CTTCGCGGGT AGCGCATCAG CTCATGGCGG TCATGGGTAG GGCTCGAACT
TGGTCGAGCA TCGTGAATGC CGGCGAACTG GCGACCGTAA TCGGCTGGAA TATCGCTGAA
ATGGACGTGC CGGGCAGCGG CAACGGCTTC GCGCCGCCAC CTCCCGAACT TCTGGACACC
GGGGACAACA CCAGCCGTCC GGTGGGTCGG AGCCAGCACC CAGCTACCCC AAACCGGCCA
GTGCATCTAC CGCTGCGCTC GTATGCGGCA CACTGCCACG TCATTGCTCC GACCAACGCG
GGCAAGTCAA CGATGCTCGC CCACTGGGCA GTTGCCGAAG CGGAAGCTGG CCGCTCACTG
GTGGTCATCG AGCCCAAAGG CGATCTGGTA GACGACATTC TCAGCCTGTT GCCGGAGGAG
CGGCGAGACG ATGTGGTCAT CATCGACCCG GGAGCAGACG CTCACCTGCC GGTGATCTCC
TTCAACCCCT TGCAGGGGGC GGTCAGTGAT GCCGAACGCC GCGCCGATTC ACTGCTCGGG
CTGTTTAAGG AGCTGTTCGG GGCAAACATC GGGCCCCGGA GCAGTGACGT GCTGTTGCAC
GCACTCATCG CACTGTCTAG ATCGGCAGAC GGAACCTTGA CCGACGTCAT GCCCTTCCTG
AGCGACGAGC GCTTCCGGCG CTCAGTGCTT GCTCACGTCA GCGATCCGCT GACCTTGGCG
CCGTGGGCGG CCTGGTTCGA CACTCTCAGC GTCGGTGAGC TCGGCCAAGT GGTCGCGCCG
ATCGGGAACA AGCTACGGAT CATCAGCGCC CGGCCGAGTA TCCGTCGACT GCTCGGCCAG
CCAGACCCCG CGTTTCGACT GGAGTCGATC TTCGAGTGCC CGACGATCGT GCTCGTCAAC
CTCAACGCCG GAGCTATTGG AGCCGAGGGC TCGAAGATCA TCGGGACATT GCTGCTACAT
CAACTGTGGG ACGCTATCCA GCGCCAGACC ACCAAGCCCC CGAAGCAGCG TCGGGCGGTG
CCAATCTTCG TCGATGAGTT CCAGGGCTAC ACGTCAGGCC TCGACTTCGC TGATGTGCTG
GCCAGAGCCC GCGGGGCAGG GGCACCATTC ACTGTGGCGC ATCAACACCT TGACCAGTTG
AGCCCAACTC TCAAATCCGC GGTGCTGGCG AATGCACGCT CACGCGTTGT GTTCCGGCCG
GCTGAGGGCG ACAGCGCCGC CCTGGCGACC GTCCTCGGCA AGCCGGTGAC TGCTGACGAC
TTGGCGCGGC TCCCGGCGTT CCATGCGCTG GTGCGTGTCC CGCTCGGTGG CACTCCGTCA
CCGGCGTTCG AGGTGGCCAC ACTGCCACTG CCGAAGTCCA CCACCGACCC GAGGCGACTC
CGGCGCCAGT CTGCCGAGCG CTACGGCACC GATCCGAAAG CTATCGACGA CGCCATCTTG
CACCGCTGGC GGGGCGATGA GCCGGATGAA CCAGTCGGAG CGCGGAGGAA GCAGCCATGA
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| Protein sequence | MTAWAWYEAF PPRGMTLEAS TNVMRALAGR PRFGLLGLVP LAVFELWLYP ERVRWLVGMD
EQISDRLPGE LMAQCPELVL VHTDNPKRPA VVAGREVRFK SLAYPIRGDV AEGVTAALLR
IRQGLRPGEA VALQFVIGPG QFFAVLPQRR TPLDVLGFTS PPEPDSNDRR AFKRKVSEPL
FAIRGRTGAV AKDPRRAAGL TRPVFSALAL ANDRHGRVQV SAQSSRVAHQ LMAVMGRART
WSSIVNAGEL ATVIGWNIAE MDVPGSGNGF APPPPELLDT GDNTSRPVGR SQHPATPNRP
VHLPLRSYAA HCHVIAPTNA GKSTMLAHWA VAEAEAGRSL VVIEPKGDLV DDILSLLPEE
RRDDVVIIDP GADAHLPVIS FNPLQGAVSD AERRADSLLG LFKELFGANI GPRSSDVLLH
ALIALSRSAD GTLTDVMPFL SDERFRRSVL AHVSDPLTLA PWAAWFDTLS VGELGQVVAP
IGNKLRIISA RPSIRRLLGQ PDPAFRLESI FECPTIVLVN LNAGAIGAEG SKIIGTLLLH
QLWDAIQRQT TKPPKQRRAV PIFVDEFQGY TSGLDFADVL ARARGAGAPF TVAHQHLDQL
SPTLKSAVLA NARSRVVFRP AEGDSAALAT VLGKPVTADD LARLPAFHAL VRVPLGGTPS
PAFEVATLPL PKSTTDPRRL RRQSAERYGT DPKAIDDAIL HRWRGDEPDE PVGARRKQP
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