| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_7303 |
|---|
| Symbol | |
|---|
| ID | 8338672 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 8485007 |
|---|
| End bp | 8486314 |
|---|
| Gene Length | 1308 bp |
|---|
| Protein Length | 435 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644960385 |
|---|
| Product | protein serine/threonine phosphatase |
|---|
| Protein accession | YP_003117973 |
|---|
| Protein GI | 256396409 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0823861 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.0111745 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCGG ACTCGGGGAA TGGGCGGTCC GGCAGGCGTG CGGCCGTCGG GCGGCGCCGG
CGCATCGTCG GCGCCCGCTT CGCCGAGAGC GAAATCGGGC GCTGGCTCAC GGACAACGCC
ATGGCCTCGG ACCTCTACCT GCTGCCCGCC CTCGGCATGG TGGCCGTCGG CTTCGGCATG
CTGACCGTGG CCTTCCCCGA AGCCTGGACC CCGGCGATGC TGGCCCTCCC GGTCCTGGCC
GGCGGCCTGC TGATGAAGCT GCGCGGGCAA CTGCTCCTGC TGGTGATCTG CATCGCGGTC
CTGATGGCCG TGTCCTGGCA CCGCGAGCGC GCCGGCGTGG CCTTCGGCTC GGCACTGGCG
GTCTTCGCCA CCGCGGCGCT GGTGATACTG ACGTCGCGCT CCCGCCTCCG GCTCGGCGTC
CAGGGCACAC GCGGTGAGGC GATGTTGCTG GACCTGCGTG AGCGGCTGCG GGCCCAGGGC
GTGGTGCCAC GCCTGCCGGC CGACTGGCAT GTCGATATGT CGATCAGATC AGCCGGTGGT
CAGTCCTTCG CCGGCGACTT CCTCATCGCG GCCCTGTCCC ACCCGGCGTT CCCGGCCCAG
CGCCGCCCCG TGCCGGTGGC CAACGCGGTC GGGACGAGCA GCGTGCCGGG ACTCGCGGCT
GCTTCCGGAA CCTCCGCGGC ACCCGGCCCA GACCCCGCCG CCAATCCCCA TCCCACTCCC
ACCGCCGACT TCGACGACGC GCCGACCCAA GGCCAGACCC TCGAACTCAG CCTCGTCGAC
GTCAGCGGCA AAGGCCTGGC AGCGGGCACC CGAGCCCTCC TCCTGTCCGG AGCCTTCGGC
GGCCTCCTCG GCACCGTCCC CTCCCGCGAC TTCCTCACCT CGGCGAACAA GTACCTCCTC
CGCCAAGACT GGGACGAAGG CTTCGCCACA GCCGTCCACC TCGTCGTCGA ACTGGAAACC
GGCCACTACC GCTTCCACAG CGCGGGCCAC CCACCCATCG CCCGCCTGAC CGCCAAAACC
GGCCGCTGGT CCACCGAAGA AGCCGAAGGC CCCCTCCTAG GCATCCTCGA CGACGCAGAA
TTCCCCGCCA CCGAAGGCTG CCTCGACAGA GGCGACGCCC TCCTCCTCTT CACCGACGGC
CTCGTAGAAC GCCCCGGCCG CGACCTAGAC GAAGGCCTAG ACCGCCTCCT AGGCGCCGCC
GAAACCCGCC TCACCACCAG CTTCGCCGGC GGAGCCGACC GCCTCATCAA CGAAGTAGCA
CCCAACGTCA AGGACGACCG AGCCCTCGTA GTCGTCTGGC GAACCTAA
|
|---|
| Protein sequence | MTADSGNGRS GRRAAVGRRR RIVGARFAES EIGRWLTDNA MASDLYLLPA LGMVAVGFGM
LTVAFPEAWT PAMLALPVLA GGLLMKLRGQ LLLLVICIAV LMAVSWHRER AGVAFGSALA
VFATAALVIL TSRSRLRLGV QGTRGEAMLL DLRERLRAQG VVPRLPADWH VDMSIRSAGG
QSFAGDFLIA ALSHPAFPAQ RRPVPVANAV GTSSVPGLAA ASGTSAAPGP DPAANPHPTP
TADFDDAPTQ GQTLELSLVD VSGKGLAAGT RALLLSGAFG GLLGTVPSRD FLTSANKYLL
RQDWDEGFAT AVHLVVELET GHYRFHSAGH PPIARLTAKT GRWSTEEAEG PLLGILDDAE
FPATEGCLDR GDALLLFTDG LVERPGRDLD EGLDRLLGAA ETRLTTSFAG GADRLINEVA
PNVKDDRALV VVWRT
|
|---|
| |