| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_7146 |
|---|
| Symbol | |
|---|
| ID | 8338514 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 8312091 |
|---|
| End bp | 8313050 |
|---|
| Gene Length | 960 bp |
|---|
| Protein Length | 319 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644960227 |
|---|
| Product | transcriptional regulator, LysR family |
|---|
| Protein accession | YP_003117816 |
|---|
| Protein GI | 256396252 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.153113 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGCGAC TGGAACTTCG TCACCTGCGC ACCCTGTGCG CGATCGCCGA CACCGGCAGC
CTGCGCCGCG CGGCCGCCGC GCAGGGCTAC TCGCAGCCGG CGCTGACGAC TCAGCTCCAG
CGGATCGAGC AGTACTTCGG CGAGCCGCTG TTCGCGCGCA GCAGCATCGG CGTCGTGCCG
ACCGCTGTCG GCGGCGAGAT CGTGGCTCAG GCGCGCGACG TGCTGGCGCG CATGGATGCC
ATCGGGCCGC GTGGCCATCG GTCCGACGAC GAATGCCGCA CGGTGCGGCT GGCCGCCACG
AACACGGCCA TGTTGTCCGG ATTGGTCACG CGGTTCCGGG ACGCGGCACC GCAGTGTTCT
GTGACGGTCA GCAGTGTCTA CTCCTCGAAG GAAATGGTGG GAATGCTCGA GGAGGGATTG
GTGGATATCG CGATCGGTGT GGATTATCCG GGGCAGGAGT TGCGGCACTC CTCGATCGTC
GCGCACCGCG GGATCGTCAC CGAGCCCAGC TTCGTGGCGG TTCCCGCGGG TCATCCCCTG
GCCGCGCATC GAGAGGTGTG TCTGACCGAT CTGGCCGACG ACGCGTGGTT CCTCACGCCC
GATGACGGCG CGGGTTGGCC CGGCGTGTTC TTCACCGCGT GCGAGGTCGC CGGGTTCCGG
CCGGCGACCG TGCACGAGTT CCTGGGCGAC CGCCGGCAGT TGCACGCGAT GATCGCCGCA
GGTCTGGGCG TCGCGGTGGT GCAGGCGACG TTCGAGACGA CGGCCGAGGT CGCTGTCAGA
CCCCTGATCG GCAGTCCGCT GTGGTGCCGC TACCTGCTCG CCTGGCGGGT GTCGGCGGTC
TCCGACGACG TCGTCGACAC CGTCTACCGG TCGGCGTCGG AGGCTTATCG GGACCTGGTC
GCCGACGCTC CGCATCTGCG CGATTGGGCT GCCAGGGCAT ACGGCTTTCC GCAGGAATAA
|
|---|
| Protein sequence | MERLELRHLR TLCAIADTGS LRRAAAAQGY SQPALTTQLQ RIEQYFGEPL FARSSIGVVP
TAVGGEIVAQ ARDVLARMDA IGPRGHRSDD ECRTVRLAAT NTAMLSGLVT RFRDAAPQCS
VTVSSVYSSK EMVGMLEEGL VDIAIGVDYP GQELRHSSIV AHRGIVTEPS FVAVPAGHPL
AAHREVCLTD LADDAWFLTP DDGAGWPGVF FTACEVAGFR PATVHEFLGD RRQLHAMIAA
GLGVAVVQAT FETTAEVAVR PLIGSPLWCR YLLAWRVSAV SDDVVDTVYR SASEAYRDLV
ADAPHLRDWA ARAYGFPQE
|
|---|
| |