Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_7095 |
Symbol | |
ID | 8338462 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | + |
Start bp | 8254921 |
End bp | 8256648 |
Gene Length | 1728 bp |
Protein Length | 575 aa |
Translation table | 11 |
GC content | 74% |
IMG OID | 644960176 |
Product | transcriptional regulator, CdaR |
Protein accession | YP_003117766 |
Protein GI | 256396202 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG3835] Sugar diacid utilization regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.680136 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.108569 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAGCAGCG CAGAACGCCC CGAGCCGGCC GCCGACGGAC CGGCCACGGC CGCGACCGGG GCGTCCCCGA CCCCGTCGAT GTACGTCACC CAGTACCCGA CCGTCGCCGA CGTCCTCCAG CTCGGCCCGG TGAAGCAGGG CGGTCCGCGG GTGGTGGCCG GCGCCGCCGG GCTGGACCGC GTGGTGCGCT GGGTGCACGT CACCGAACTG GTCGACGTCG GCACCATCCT GCGCGGCGGC GAGCTGGTCC TGTCCACCGG CATCGCCTGG CCCGAGGACC GCGACCGGCT CGCGGACTTC GTCGCCGACC TGGCCAAGCT CGGCGCCGCC GGCCTGGTCC TGGAGCTGGG CCGGCGCTAC ACCGACAGCA GCCTGCCCAA GGCGCTGCTG GCCGCCGCCG AGAAGCACAG CCTGCCGGTG ATCACCCTGG CGCTCGACAC ACGTTTCGTC ACGATTACCG AAGCCGTGCA CGGTCTGATC ATCGACGCCC AACTCGCCGA GCTGCGCGCC TCCGACGAGG TCCACCAGAC CTTCACCGAA CTCGCGGTCG AGGGCGCCTC CCCGGATGAG GTGGTCCAGC AGATCGGCCG CATGTCCGGC TGCCCGGTGG TGCTGGAGAA CCTGGCGCAC CAGGTCCTCA CCTACTCTCA GGCCGGCGCC GATCCGGCGG TCCTGCTCGA CGGCTGGGAG GGCCGCTCCC GCTCGGTGCG CCCGACCACC GGACGCACCG TGTACGACGA GCGCTCCGGC TGGCTGACCA CGGTGGTCGG CGCGCGCGGG CACGACTGGG GACGCCTGGT CCTGATCTGC AACGACCCGG CGCCGGTCCC GCGCCTGTCC ATGTTGTTGG AGCGCGCCGC CGCGACCCTG GCGCTGAACC GGCTGGTCGA GCGGGACCGC GATTCGCTGG AGCGGCAGAC GCACCGGACC TTGCTGACCG CGATCCTGTC CCACGGCCAG CCGGCGTCGG AGGTCGCGCT GCGGGCGCGC GCGCTCGGCG TGACGCTCGA CGGCCGCCGG CTGGTCGGCG TCGTGCTGCG GCTGCGCACC GCCGCGCACC CGACGGCGCT GGAGACGCAG GCGCGGCTGC GCGAGCTGAC CGACCAGGCC GCCGCGGCGA TCCGCGACCG CCGGCTCTCG GCGCTGATCG GCACGCTGGA CGAGCACAGC GTCGGCCTCC TGCTCGCGCT CGGACCGCAG GACCGCGAGG ACGCCGCCCT GGACGGCTTC GCCGAGCGGG TCCGCCGGCT CGTGGAGCGT CCGACGTCGC CGTCGTCGGC CGACGGCTAC GTCATCGCCG TCGGCACCTC GGTCGGCGCG GTACGCGACG CGCGCCGGTC GCTGCTGGAA GCGGTGCAGG TCGCGGACGC GGCGGTGCGG CAGCCCGCGG TGCAGGCGCC GTACCACCGG CTGGTGGACG TCCGCCTGCG CGGACTGCTG CATCTGCTGC GCGACGACGC GCGCCTGCAG ACCTTCGTGG AACGCGAGCT CGGCCCGCTG CTGGCCTACG ACGCCGAGCG CGGCACGGAC TTGGTCAGGA TGCTGACGGT GTATGTGGAT TCGGGACGCA ACAAGTCGGC GGCGGCCGAC GCCGCGCACC TGTCCCGGCC GTCGTTCTAC GAGCGGCTGC ACCGGATCGA GCGGATCCTG TCGGTGGACC TGGACTCGGT GGAGTCGTGT CTGGCGTTGC ACGTGGCGCT GCTGGCCCTG GAAGCTATCA GACCATGA
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Protein sequence | MSSAERPEPA ADGPATAATG ASPTPSMYVT QYPTVADVLQ LGPVKQGGPR VVAGAAGLDR VVRWVHVTEL VDVGTILRGG ELVLSTGIAW PEDRDRLADF VADLAKLGAA GLVLELGRRY TDSSLPKALL AAAEKHSLPV ITLALDTRFV TITEAVHGLI IDAQLAELRA SDEVHQTFTE LAVEGASPDE VVQQIGRMSG CPVVLENLAH QVLTYSQAGA DPAVLLDGWE GRSRSVRPTT GRTVYDERSG WLTTVVGARG HDWGRLVLIC NDPAPVPRLS MLLERAAATL ALNRLVERDR DSLERQTHRT LLTAILSHGQ PASEVALRAR ALGVTLDGRR LVGVVLRLRT AAHPTALETQ ARLRELTDQA AAAIRDRRLS ALIGTLDEHS VGLLLALGPQ DREDAALDGF AERVRRLVER PTSPSSADGY VIAVGTSVGA VRDARRSLLE AVQVADAAVR QPAVQAPYHR LVDVRLRGLL HLLRDDARLQ TFVERELGPL LAYDAERGTD LVRMLTVYVD SGRNKSAAAD AAHLSRPSFY ERLHRIERIL SVDLDSVESC LALHVALLAL EAIRP
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