| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_6892 |
|---|
| Symbol | |
|---|
| ID | 8338258 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 7961168 |
|---|
| End bp | 7962061 |
|---|
| Gene Length | 894 bp |
|---|
| Protein Length | 297 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644959980 |
|---|
| Product | type II secretion system protein |
|---|
| Protein accession | YP_003117571 |
|---|
| Protein GI | 256396007 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00267588 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.473446 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTTTGC TCGTGATCGC TGCGGCTGCC GGTGGAGCTG GGCTGTGGCT TCTCCTCGCC
GGCCTGCTAC CGCCGAAACT GAGCCTCGCG GAGCAGATGG CTCGGATCCC GATGTCTTCT
CCGCCGAGTC AAGGTGGTGT GAGGGCTCCG GACACGTCGT TCGCTACTCG GCTCGGCAGC
CGGGCTGCTG AGACTCTCAC GCGTGCGGGG CTGCCTCAGG CGGGAGCCCG GGCCAATCTC
GTATTGCTGG ACCGGGAGGT CCTGCCGTTC TTGGCACAGA AGGCCGGGTG CGCCGTGATC
GGAGTGCTGC TGCCTGCGGC ATCGTTCGCC ACGCTCACGA TCGTGGGCCT CGACCTTCCG
CTGACGATTC CCGCCCTGGC CGCGGGCGTC CTGGCCGCAG TGCTGTTCTT TGTTCCGGAT
CTCGCGCTGG CTGCCGAGGC CGAGGAGTTC CGGACCGCCG GCCGGGTGGC AGTCCGGACG
TTTCTGGACC AGGCCGCCAC GACTCTTGCC GGTGGGGCGG GAATCGAGCA GGCGTTGGTC
GCCGCCGCGG ACGGCCACGG TCCGGTCTTT CGGGCGATCC GTGACTCGAT TACCGATTCC
CGGCTCGCGC GCGAGCCTGC CTGGCCGCAT CTCGACGCCC TTGGCAAGCG GTTGGGAATC
CGAGAGCTGT GCGAGTTGGC CGCAGCGTGC ACGTTGGCCG GTGCTGAAGG CGCGAAAGTA
AAGTCGTCGA TCGCCGCGAA GGCCCGCTCG ATGCGGGAAC GGGAGTTCGC CGCGCAGACC
GAGGCTGTCG AAGCCGACAG CGAGCGTTTG GCGATGCCCG GCGGTCTGCT GGGGATGTCA
TTCGTCTGCT TCCTGACATA CGCCGCGCTT GCGGCTGCGG CGAAGCAGAT CTGA
|
|---|
| Protein sequence | MLLLVIAAAA GGAGLWLLLA GLLPPKLSLA EQMARIPMSS PPSQGGVRAP DTSFATRLGS
RAAETLTRAG LPQAGARANL VLLDREVLPF LAQKAGCAVI GVLLPAASFA TLTIVGLDLP
LTIPALAAGV LAAVLFFVPD LALAAEAEEF RTAGRVAVRT FLDQAATTLA GGAGIEQALV
AAADGHGPVF RAIRDSITDS RLAREPAWPH LDALGKRLGI RELCELAAAC TLAGAEGAKV
KSSIAAKARS MREREFAAQT EAVEADSERL AMPGGLLGMS FVCFLTYAAL AAAAKQI
|
|---|
| |