| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_6850 |
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| Symbol | |
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| ID | 8338216 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | + |
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| Start bp | 7911947 |
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| End bp | 7914448 |
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| Gene Length | 2502 bp |
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| Protein Length | 833 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644959941 |
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| Product | type IV secretory pathway VirD4 protein-like protein |
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| Protein accession | YP_003117532 |
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| Protein GI | 256395968 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0108098 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGCCTC TGATTCGCCC TGTCGAGGAC GTCAGCGTCT CAACGCCTCC GCAGCCCGGC
CTACTTATCC GCCTATTCGA GGACCCGAAC TCGTTCTTCG CCGCCATCAC CGCTGGACTT
GCCGACAGCG TGTTCAGCAA TTGGATGTTC GACGCGTCAG GCTCGATTGC CGTTCTCGGC
ACCGTGGCTG GTACGCGCCT CGTGCTCCGC GCTCGACACC AGCGGCTCAT GGACGATGGG
GCCCGTCTGA TCGAGGTGCA GGTGCCTCCC GCCGTCGGTG CTGACTCCGC CGCAGCGTTT
TGGTCGCACC TGCACGCCTT GCTGCGGCCG GCATGGCGAC GCGTGCTCGA CGGCCAACCG
CACCTCACCT TCGAGTTCTG CTTCGACGCC TCGGGCGCCC GCATCGGGGT CTGGGTTCCC
GGCGTGGTCT CGCCGGGGGT TGTCGAGGCA GCTGTCGAAT CAGCCTGGCC GGGCGCCCGA
ACCACCGTCG CGATGGCACC TTCGGCGCCG CTGCCGTCAA CCGCCGTCGC AGCGACCGGC
GGCAGACTGC GTTTGGCCAA GCCCGAGGTG CTTCCGCTGC ACGCGAAGTT CGATTCGGAC
CCGCTGCGTG CGCTTCTCGG CGCCGCAGCC GGATTGAAAA GCGGCGAGTT CGCGACGGTT
CAGGTACTCG CGCGTCCCAG TACAGGGCGA CGCTTGCGCA GCGCACGCCG CCAGGTAGCG
CATCTGCGTC ACCAAGCGTC GGGGCAGCGT CGGCCGACCG GCCGTGCTGT CGCCCTGTCG
GCACTCGACG AGCTCACTCT GAGCCATCGC GGCAGTTCGT GGCCGTTGGT CGGCCGCATG
GATCCGGCGG CAGCAGCCGA TCTGCGCGCA GCGGTGGGCA AGATGACCGG GTCGATGTGG
GAGACCGAAG TTCGCTATGC CGTGGCTTCG ACGGTCGAGG CGGAATCCCT CAAAGAGCTT
CGGACTCGAC TGCGCGGCAC AGCCGGCGCC CTCGCGGCGA CGTTCGGAGT TTTCGCCGAG
CGGAACTGGT GGACGCGCAA ACGCCTTGTT AATCCGGTGG CGGTGACCTC GGCTCGTGCA
TTCCGTCGCG GCGACCTCCT TTCGATCGCG GAGCTGGCCG CCGTCGCGCA CCTGCCGCTC
GATCCGTTCG CCCTCGGAGT CTCGCGGGCC GGTGCCCGGT CTGTCGCGCC GCCTCCCGCC
GTCGCAACGG CCGGACGCGA CGTCAAGCTC ATGGGCGATT CCGACGCAGG ACCAGCGCGA
CCGATCGGGC TGAAAGTCGT CGACGCCCGT CAGCACACGC ACATCCTCGG CGCCACCGGC
AGCGGGAAAT CGACGCTGAT GGGTCGGATG ATCCTGGACG ACATCACCGC AGGTCGCGGC
GTCGTCGTCA TCGATCCCAA AGGCGACCTC GTCACCGACC TACTCGGCCG TCTTCCCGCA
CAGGCCCGGC CGCGCCTGGT CCTCATCGAT CCGTCCGAGC CTGGTCCGCG GGCCACGCTG
AACGTGCTCA ATGCCGGGGA CGATCAAGAG CTGCTGGTCG ACAATCTGGT CGGGATCTTC
CGGCGGATCT ACGCGGCGCA CTGGGGTCCC CGTACCGATG ACGTCCTGCG CGCCGCGCTG
CTGACGCTAC TCGCGACGGC CGACGCCAAG GTGATGGCCA AGGTCAAGAC GCCGACGCTC
GCGGACGTAC CCGATTTGCT GATCAAGAAC GTGGTCCGGC GACGTGTCCT GTCCAGACTT
CCGACCTCGT ACTCCGTACT GCACGGATTC TGGGACGGCT ACGACAAGCT GTCGGAAGGC
GGACGGGCCG CCGTAGTCGC GCCTCTCCTG AACAAGCTGC GTGCGTTCCT GCTGCGAGAC
TTCGTCCAGA CGACCATCGC ACAGCCTGCG TCGACCATCG ATCTGCGCGA GGTTCTCGAC
GGAGGCATCC TGCTTGTCCG GCTGCCCAAA GGCGTGCTCG GCGAGGAGAC CGCCCGGCTG
CTGGGTTCGT TCATCGTCGC CGCGACATGG CACGCCGCCT CGGCCCGCGC GAAGTCGGCC
GAGGGGGCAC GCATCGACTC CGGGCTCTAC CTCGACGAGG CGCACAACTT CCTCACGATG
CCGATCGCCC TGGAGGACAT GCTCGCCGAG GCTCGCGGGT ACCGGCTCTC GTTGGTCGTC
GCCCACCAGA ACCTCGCACA GATGCCGACT GATCTGCGGG AAGGCATCAG CGCGAACACC
CGCAACAAGG TCTTCTTCAC GTGCTCCCCG GAGGACGCAC GGGTGCTGGC CACACACACC
GCACCGATGC TTTCCGAGCA CGACCTCTCA CATCTGAGCG GGTATCAGGC CGCGCTGCGA
CTGAACGTCG ACGGCGTCAC CATGCCGGCG TTCACCCTGC GCACCCGGCC GCTCCCGCCG
TCCGAGCCGC TCCACGCCGA GCACAGCCGG CTGGCCAGCC GAGCCAACAC AGCCGCCCGT
CACACCGCGG TCCAGCACCT TCTGCCGGGA GACCATCAGT GA
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| Protein sequence | MLPLIRPVED VSVSTPPQPG LLIRLFEDPN SFFAAITAGL ADSVFSNWMF DASGSIAVLG
TVAGTRLVLR ARHQRLMDDG ARLIEVQVPP AVGADSAAAF WSHLHALLRP AWRRVLDGQP
HLTFEFCFDA SGARIGVWVP GVVSPGVVEA AVESAWPGAR TTVAMAPSAP LPSTAVAATG
GRLRLAKPEV LPLHAKFDSD PLRALLGAAA GLKSGEFATV QVLARPSTGR RLRSARRQVA
HLRHQASGQR RPTGRAVALS ALDELTLSHR GSSWPLVGRM DPAAAADLRA AVGKMTGSMW
ETEVRYAVAS TVEAESLKEL RTRLRGTAGA LAATFGVFAE RNWWTRKRLV NPVAVTSARA
FRRGDLLSIA ELAAVAHLPL DPFALGVSRA GARSVAPPPA VATAGRDVKL MGDSDAGPAR
PIGLKVVDAR QHTHILGATG SGKSTLMGRM ILDDITAGRG VVVIDPKGDL VTDLLGRLPA
QARPRLVLID PSEPGPRATL NVLNAGDDQE LLVDNLVGIF RRIYAAHWGP RTDDVLRAAL
LTLLATADAK VMAKVKTPTL ADVPDLLIKN VVRRRVLSRL PTSYSVLHGF WDGYDKLSEG
GRAAVVAPLL NKLRAFLLRD FVQTTIAQPA STIDLREVLD GGILLVRLPK GVLGEETARL
LGSFIVAATW HAASARAKSA EGARIDSGLY LDEAHNFLTM PIALEDMLAE ARGYRLSLVV
AHQNLAQMPT DLREGISANT RNKVFFTCSP EDARVLATHT APMLSEHDLS HLSGYQAALR
LNVDGVTMPA FTLRTRPLPP SEPLHAEHSR LASRANTAAR HTAVQHLLPG DHQ
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