Gene Caci_6679 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_6679 
Symbol 
ID8338043 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand+ 
Start bp7694607 
End bp7695236 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content70% 
IMG OID644959773 
Producttranscriptional regulator, TetR family 
Protein accessionYP_003117366 
Protein GI256395802 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.874837 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTGGAGA CCGGCGCACC CGCCGCCAAG CGCGGCCGCC GCACCGACGG CGGCCAGGCC 
AAGGAGGCCA TCGAGCAAGC GGCGCGCCGA CTGTTCGCCG ACCACGGCTT CGACCGCACC 
TCGGTCCGCC AGGTGGCGCT GGCCGCCGGC GTCGACCCGA TGCTGGTGAC GCACTACTTC 
AAGACGAAGG CAGGACTGTT CGCAGCGGTC GTCCAGCCAC CGGTGGACCC GGCACTAGCG 
ATCACCTTCG TCCTCGAAGA AGGTCCCGAC CACGCCGGCG AGCGCCTGGC GCACTTCGTC 
CTGCGCACCC TGGAGGACCC CGACAGCCAG AAATGGATCG TGGCCATGGT CCGCGCGGCA 
ACGGCCGAAC CCGAAGTCGC CGCCGTGGTC CGCGAACGCA TGGTGGTACC GATGCTGATC 
CCCTTGGCCG AGGCCGTCGG CGCCAGCGAC CCGGAGTACC GCGCGACGCT GGTGATGACG 
CAGCTGATCG GCTTGGCGGT AGGGCGCTAC GTGCTCCAGG TGGAGCCGCT GGCGTCGCGG 
CCAGCGCAGG AGGTGGCCGC TGATCTGGCG GGGACTTTTC AGCGGTATTT GACGGGCTCG 
CTCAGCGGGT CGGAGGTAGG TGAGTCATAG
 
Protein sequence
MVETGAPAAK RGRRTDGGQA KEAIEQAARR LFADHGFDRT SVRQVALAAG VDPMLVTHYF 
KTKAGLFAAV VQPPVDPALA ITFVLEEGPD HAGERLAHFV LRTLEDPDSQ KWIVAMVRAA 
TAEPEVAAVV RERMVVPMLI PLAEAVGASD PEYRATLVMT QLIGLAVGRY VLQVEPLASR 
PAQEVAADLA GTFQRYLTGS LSGSEVGES