Gene Caci_6537 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_6537 
Symbol 
ID8337901 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand- 
Start bp7533491 
End bp7534183 
Gene Length693 bp 
Protein Length230 aa 
Translation table11 
GC content69% 
IMG OID644959633 
Producttranscriptional regulator, TetR family 
Protein accessionYP_003117226 
Protein GI256395662 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.563628 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.0265458 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGGGAC CTGGGCCAAC GCATTCCCAG CCGCGCGGCG GCCGGATCGC CAAGCGCGCG 
GCGATCATCG ACGGCGCCCG CGCCGTTTTC GGCCGCGACG GCTACACGCG CGCGTCCGTC 
GACGCCATCG CCGCTCAGGC CGGGGTTTCC ACCCGCACTG TCTACAACCA CTTCGGAGAC 
AAGGAGCACC TGTTCGCTGA GGTCGTCACC GGAGGCGCGA CCGATGTGCA CAGCGCCCTG 
TCCGCCCATA CCGCAGCCCG TCTGACTCCT GTCACGGATG CCGCGCAGAT AGAGGGAGCC 
CTCGTCGCGC TCGCCCGCGA CTGGGTCGCC ACGATGGACC TCTTCCCGGC CCACTTCGCC 
GTCGCTCGCC AAGTCGCCGC CGAGTCAGCG CATCTGGACC CCCGACTCGT CGAGGCTTGG 
TACGAGAGCG GACCGCTGGC AGCGCGCACC GACCTGGCGC GCCATTTCGA CCGCCTGGCC 
CGGTCCGGCC TGCTGCGATC AGACGATCCC GACCGGACCG CACGGCATTT CCATCTGTTG 
GCCTTCGCCG AGATCACCGA GCGCTCAGGC AACGGCGCGG TCCCCCTGCC CGAGGCGGAG 
ACCGAGCTGA TCATCGCCTC CGGGGTGCGC GCCTTTCTGA CCGGCTATCA GAAGGAGCAA 
GGCCGCCAGA TTCCTCAACC ACCTGGCCAA TAA
 
Protein sequence
MPGPGPTHSQ PRGGRIAKRA AIIDGARAVF GRDGYTRASV DAIAAQAGVS TRTVYNHFGD 
KEHLFAEVVT GGATDVHSAL SAHTAARLTP VTDAAQIEGA LVALARDWVA TMDLFPAHFA 
VARQVAAESA HLDPRLVEAW YESGPLAART DLARHFDRLA RSGLLRSDDP DRTARHFHLL 
AFAEITERSG NGAVPLPEAE TELIIASGVR AFLTGYQKEQ GRQIPQPPGQ