| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_6535 |
|---|
| Symbol | |
|---|
| ID | 8337899 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 7531728 |
|---|
| End bp | 7532912 |
|---|
| Gene Length | 1185 bp |
|---|
| Protein Length | 394 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644959631 |
|---|
| Product | protein of unknown function UPF0118 |
|---|
| Protein accession | YP_003117224 |
|---|
| Protein GI | 256395660 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0628] Predicted permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.278292 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.0349253 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGAGG GAGGGACGGT TCTGCCATCG GCGACCGTGG CGGGGCGTGA AGGTCTGCGC
GCGACAGAAT CCGGCGTAGG GCGATCGCCG GAGGAGCCGG ATGCGCCGGC AGGTCAGCGG
CTGTGGATTC CGGGGCGGGT CACACGGCGG CCTCCTGCGC AGCGGTCCTG GTTCCAGATC
GGCTACGGGT TCACCGCCGG GGCGATCCTG GCGTATGCGA CTGCGGAGGC GATCCTGCGA
TCCGCGCAGG TTTTGGTTCT GGTCCTGCTC TCGGCGTTTC TCGCCGTCAG TCTGGAGCCG
ATCGTGGTGG GCCTGGTGCG GCTCCGGCTG CGCCGCGGCC TGGCGGTCGC TGTGGTGCTG
GTCGGATTCA CCGCCGTGCT GGGCGGCTTC CTCGCTCTGG TGATCCCGCC GGTGAGCAAC
GAGATCACTG CCCTGACCAA GGAGATCCCC ACGTGGTTGC AGGAGATTCA CGACCACCAC
TCGCAGCTGG GCAAGATCGA GGACCGCTAC CACCTGGTCG CGAAGGCCAA GGCGCAATTC
GCCTCCGGTG ACGCCTCCGG CAAACTCGTC TCCGGTCTGC TGACCGCCGG GCAGATCATC
GTCGGCGCGG TCACCTCGAC CTTCATCGTC ATCACCCTGA CGATCTACTT CCTCGTCGGG
ATGCCCGCGG TGAGGGACTT CGGGCTGCGG TTCGTCAGTG CGCGCAACCG CCCCCGCAGC
GCGGACCTGA CCAACCAGAT CCTGCTGCAA GTCGGCCGGT ACATGCTCGC CAACCTGGCG
ACCTCGGCGC TGGCCGGACT GGCCACCTTC ATCTGGTGCA TGGCCGTCGG CGTGCCGTAC
GCGGCGGTGC TTGGCTTCCT GGTCGCCATC ATGGACATGG TCCCGGTCAT CGGCTCGACG
GTCGGGGGCG CCGCGGTCAG CCTGGTCGCG CTGTCGGTCT CGGTGCCGAC CGCCGTGGCC
TCGCTGGTCT TCTACACCCT GTTCCGGTTC GCCGAAGACC ACCTGATCAA TCCGCTGACG
ATGAAGTACA CAGTGCGGAT CCACCCCATC GCGACCATGA TCGCGGTGCT GGTCATGGGA
ACCCTGATGG GCCTGGTCGG CGCCCTGATC GCGGTACCGA CCGCCACCGC GATCAGTCTC
ATACTCCAGG AAGTGGTCTT CCCCAAACGC GACCAGGCCG TTTAG
|
|---|
| Protein sequence | MTEGGTVLPS ATVAGREGLR ATESGVGRSP EEPDAPAGQR LWIPGRVTRR PPAQRSWFQI
GYGFTAGAIL AYATAEAILR SAQVLVLVLL SAFLAVSLEP IVVGLVRLRL RRGLAVAVVL
VGFTAVLGGF LALVIPPVSN EITALTKEIP TWLQEIHDHH SQLGKIEDRY HLVAKAKAQF
ASGDASGKLV SGLLTAGQII VGAVTSTFIV ITLTIYFLVG MPAVRDFGLR FVSARNRPRS
ADLTNQILLQ VGRYMLANLA TSALAGLATF IWCMAVGVPY AAVLGFLVAI MDMVPVIGST
VGGAAVSLVA LSVSVPTAVA SLVFYTLFRF AEDHLINPLT MKYTVRIHPI ATMIAVLVMG
TLMGLVGALI AVPTATAISL ILQEVVFPKR DQAV
|
|---|
| |