Gene Caci_6123 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_6123 
Symbol 
ID8337486 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand- 
Start bp7046251 
End bp7046949 
Gene Length699 bp 
Protein Length232 aa 
Translation table11 
GC content76% 
IMG OID644959224 
Producttranscriptional regulator, TetR family 
Protein accessionYP_003116818 
Protein GI256395254 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.417481 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.0113351 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAACGGGT CCGCGAAAGC CGATACGGGG GCAGGTAGAG TCGCCGGGCA GAGCGCGCCG 
GCCGTCGTGT CGCCGGCCGC CGTTGTGCCG CCGAGCGCCA TCGCGCCGCC GGTGGTCGCC 
CTACCGCCGA GCGCCGCCGA ACGACCACTG CGCGCCGACG CGCGCCGCAA CCGTCAGCGG 
GTGTTGGAGG CGGCCGCGCA GGCGTTCGCC GCCGACGGTC CGGCGGTCCC GCTGGACGAG 
ATCGCGCGCC GCGCCGGGGT CGGCGCGGGC ACCGTCTACC GGCACTTCCC GACCAAGGAA 
GAGCTGCTGG CGGCCGTGCT CATCGCCCGA ATGGAGACGA TGCTGGCCGA GGTGCGCGGC 
GCGCTGGCGA AACCGGATCC GGGCCCGGCG TTCTACGCCT CCTTCGTGGC CATGACCCTC 
GACGCGCGGG ACAAGACGGA CCTCGCCGAG GCGTTGACCA GCCACGGGAT CGACGTCCGG 
GCGGCGACCG GTGAGATCGC CGGGGCGCTG AAGGCCGCGC TGGCCGATCT GCTGCGGCGG 
GCGCAGGACG CCGGCGCGGT GCGTGCCGAT GTGGGCGTCG AGGATCTGCA CGCCCTGGTG 
ATCGGCGCCA TCGCCGCCGC GCGCTCAGCG CCGTTGGCGG ACGTGCCGCG GGTGGCGGGG 
TTGGTGGCCG ACGGATTGCG GCCGCGTCCG AGCCGCTGA
 
Protein sequence
MNGSAKADTG AGRVAGQSAP AVVSPAAVVP PSAIAPPVVA LPPSAAERPL RADARRNRQR 
VLEAAAQAFA ADGPAVPLDE IARRAGVGAG TVYRHFPTKE ELLAAVLIAR METMLAEVRG 
ALAKPDPGPA FYASFVAMTL DARDKTDLAE ALTSHGIDVR AATGEIAGAL KAALADLLRR 
AQDAGAVRAD VGVEDLHALV IGAIAAARSA PLADVPRVAG LVADGLRPRP SR