Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_5990 |
Symbol | |
ID | 8337353 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | - |
Start bp | 6911076 |
End bp | 6913022 |
Gene Length | 1947 bp |
Protein Length | 648 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644959095 |
Product | Carbohydrate-binding CenC domain protein |
Protein accession | YP_003116689 |
Protein GI | 256395125 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3469] Chitinase |
TIGRFAM ID | |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.793128 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.422272 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | TTGACCAGTG CAAGAACGCG CCTCCGCGCG TTCGCGGCCC TGTTGGCCGC AACCCTGATA GCCGCCACGA TGACCATCGC CCTGAGCGCC TCCCGCGCCC GCGCCGACAG CAACCTGGTG GTGAACTCCG GCTTCGAGAC CGGAAGCCTG AGCCCGTGGA CGTGTGACGG CAGCACCGGA AGCGTGGTGT CCTCCCCGGT CCACAGCGGC AGCCACGCGC TGGCCGGAGC CGCGAACAAC TCCGACGACG CGCAGTGCAC GCAGACGGTG TCCGTGCAGC CGAATTCGGC GTACACGCTC TCGGCGTACG TCGAGGGCGG CTACGTCTAC ATCGGCGCCA CCGGCTACAG CTCCACGTGG ACGCCGTCGG CGACCTCCTT CCAGCAGCTG TCCACCAGCT TCACCACCGG CGCCTCGACC ACGAGCGTCC AGATCTACCT GCACGGCTGG TACGGGCAGG GCACGTACTT CGCCGACGAC GTCTCGCTTG TCGGACCGGG TGGCCAGACT CAGGTGCCCC CCGTTCCCAG CGGTCTGTCG GTCAGCGGGA CGACGTCGAG CTCGGTGTCG CTGGCGTGGA ACGCCTCGAC CGGAGCCACC GGCTACAACG TCTACCGTGG CGGCGCCAAG ATCGCGAGCG TGACCGGTAC TTCGTACACG AACACCGGTC TGAGCCCGTC CACCAGTTAC AGCTACACCG TCACCGCGAC GAACTCTGCA GGGGAGTCGG CGCAGTCCGG AGCTGTCACC GGTACCACCA CCGCCGGCGG GACTCAGGTT CCGCCGACGC CCAGCGGTCT GTCGGTCAGC GGGACGACGT CGAGCTCGGT GTCGCTGGCG TGGAACGCCT CCAGCGGAGC CACCGGCTAC AACGTCTATC GCGGCGGTTC GAAGATCGCG AGCGTGACCG GTACTTCGTA CACGAACACC GGTCTGAGCG CCTCCACCAC CTACAGCTAC ACGGTCTCGG CGACCAACTC GGCCGGCGAG TCCGGGCAGT CCTCCGCGGT GAGCGCCACG ACCGCCGGAA CCGGCGGCGG GAACGGCTCG CTGCCCAAGC ACGTGCTGAC CGGCTACTGG CAGGACTTCG TGAACAGCGC CAAGCCGCTG AGCCTGGCGG CCGTGCCCGC CGGCTACAAC CTCGTCGCCG TGGCCTTCGC CAACGCCGAC CCGAGCCACC CCGGCGGCGT GACGTTCAGC GTCGACTCCG GGCTGTCCTC GGCGCTCGGC GGCTACACCG ACGCACAGTT CAAGGCGGAC ATCGCCACGC TGCACTCGCG CGGCCAGAAG GTGATCGTCT CCGTCGGCGG GCAGAACGGC GCGATCAGCG TCGGCGACTC CACGTCGGCG AACAACTTCG CCACCAGCGT CTACAGCATC ATGCAGAGCT ACGGCTTCGA CGGCGTGGAC ATCGACCTGG AGAACGGCGT CAACGCCACG TACATGGCGC AGGCGCTGCA GTCGCTGTCC GGAAAGGCCG GCTCGGGGCT GATCATCACC ATGGCTCCGC AGACGATCGA CATGCAGTCG ACCGGCATGG CGTACTTCCA GCTGGCGCTG AACATCAAGA ACATCCTCAC GATCTCCAAC ATGCAGTACT ACAACTCCGG GTCGATGAAC GGCTGCGACC AGGGTGTGTA CTCCGAGGGG ACCGAGAACT TCATGACCGC CCTGGCCTGC ATCCAGCTGC AGGGCGGGCT GCGTCCGGAC CAGGTCGGGC TCGGACTGCC GGCCTCCGGC AGCGCGGCCG GCGGCGGCTA CGTCTCGCCC TCGCTGGTGA ACAACGCGCT GGACTGCCTG GCGGCCAAGA CGAGCTGCGG CTCGTTCGTC CCGCCGAGCA CCTGGCCGGC CATCCGCGGC GCGATGACCT GGTCGATCAA CTGGGACGCG AGCAACGGAT ACAGCTTCGT GAACACCGTT GCTCCGCACC TCGCGGCGAT GCCGTGA
|
Protein sequence | MTSARTRLRA FAALLAATLI AATMTIALSA SRARADSNLV VNSGFETGSL SPWTCDGSTG SVVSSPVHSG SHALAGAANN SDDAQCTQTV SVQPNSAYTL SAYVEGGYVY IGATGYSSTW TPSATSFQQL STSFTTGAST TSVQIYLHGW YGQGTYFADD VSLVGPGGQT QVPPVPSGLS VSGTTSSSVS LAWNASTGAT GYNVYRGGAK IASVTGTSYT NTGLSPSTSY SYTVTATNSA GESAQSGAVT GTTTAGGTQV PPTPSGLSVS GTTSSSVSLA WNASSGATGY NVYRGGSKIA SVTGTSYTNT GLSASTTYSY TVSATNSAGE SGQSSAVSAT TAGTGGGNGS LPKHVLTGYW QDFVNSAKPL SLAAVPAGYN LVAVAFANAD PSHPGGVTFS VDSGLSSALG GYTDAQFKAD IATLHSRGQK VIVSVGGQNG AISVGDSTSA NNFATSVYSI MQSYGFDGVD IDLENGVNAT YMAQALQSLS GKAGSGLIIT MAPQTIDMQS TGMAYFQLAL NIKNILTISN MQYYNSGSMN GCDQGVYSEG TENFMTALAC IQLQGGLRPD QVGLGLPASG SAAGGGYVSP SLVNNALDCL AAKTSCGSFV PPSTWPAIRG AMTWSINWDA SNGYSFVNTV APHLAAMP
|
| |