| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_5870 |
|---|
| Symbol | |
|---|
| ID | 8337231 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 6777951 |
|---|
| End bp | 6779159 |
|---|
| Gene Length | 1209 bp |
|---|
| Protein Length | 402 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644958974 |
|---|
| Product | putative transcriptional regulator, PucR family |
|---|
| Protein accession | YP_003116569 |
|---|
| Protein GI | 256395005 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2508] Regulator of polyketide synthase expression |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.158333 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCAGCAGA TCGCTTCCCG GAACCCGGTA GACGCCGAGA TAGCCCAACT CGCGAGCCTC
ATGCTGGCCC GCACCGACGA GCTGACGGAC CTGGTGCTGA ACCGGGTCGC CGAGGAGTTC
CCGCTCTACA TCGGCATGAT CGCGCCGGAC TTGCTCCACG TCACGATCAA GGACCACATC
CACTTCGCCT TCGAGCCCAT CAGCCGCTAC ATGCCCCCCG ACGCCCGCCC GGCGGCGGCC
TCGGGCCGCG ACCGCGCGAT GGAGGGCATT CCGCTGACCG TCATCATGGA CGGCTACCGC
ATCGCCTTCG GCGTGCTGTG GAAGGAGTTG GCGACCGCCG CGGACTCCGT CGGGCTGTCG
ACGAAGGCGG CGCTGCGCGC GGCCTCGGAG GTGATGGACA CCCTCGACGC GTTCACCCGG
GAGAGTTCCT TGGCGTACAA GGAGGAACTG CGCTACCAGG CGCGCCGGGA GGAGCAGCAG
CGCGCGGCTC TGGTCCAGGC GCTGCTGGAA GGCCGGCTGG ACGACACCAA CGTCTGGGAG
GCCGCCGAAC TCCTGCGCCT GCCGACCGTC GGACCGTACG TGGTCATCGC CGCGCGCGTA
CCCAACGCCG GCGAATACGG TCTGCCGCAC ATCGAGCGCG AACTCGGCGG CATGGGCATC
GACTCGGCGT GGCGCCTGAT GCACGACGTC GAAGTCGGCG TCGCGCACCT GCCGCGCCCC
GGCGACCAGT TCGACCTGAT GGTCACCGCG CTGGCCGCCG AGGGGACCGG CCGGGTCGGC
GTCAGCCCGC CGTACGACCA CCTGCTGTCC ACCTCCCAGG CCACGCGCCT GGCCCGCATC
GCCATGCGCG GGGCGCAGGA GCGGCGCACC GTGGTGGTCT TCGGCCGCGA TCCGCTCTCC
GCCGCCGCCG CGAGCGCGCC GGACATCATG CCCCAGGTCG CCGACTCGGT GCTCCGAGGT
CTGGACGGGC TCGCCGACGA GGACCGGACG CTGCTGCTGG ACACGTTCGG GGCGTGGCTG
GACTCCGACG GCTCGGCGGC CGAGGCGGCC AAGCGGCTGT TCGTGCACCC CAACACCGTG
CGGTACCGCC TGCGGCGGTT GGAGGAGCGG ACCGGGCGCC TGCTGGCGAA TCCGCGGGCG
GTGGCCGAGT TGAGTCTGGC CTATGAGATC GACTGCGCTT TGATTGCGGA GGTCGGCACG
GGAGGCTAG
|
|---|
| Protein sequence | MQQIASRNPV DAEIAQLASL MLARTDELTD LVLNRVAEEF PLYIGMIAPD LLHVTIKDHI
HFAFEPISRY MPPDARPAAA SGRDRAMEGI PLTVIMDGYR IAFGVLWKEL ATAADSVGLS
TKAALRAASE VMDTLDAFTR ESSLAYKEEL RYQARREEQQ RAALVQALLE GRLDDTNVWE
AAELLRLPTV GPYVVIAARV PNAGEYGLPH IERELGGMGI DSAWRLMHDV EVGVAHLPRP
GDQFDLMVTA LAAEGTGRVG VSPPYDHLLS TSQATRLARI AMRGAQERRT VVVFGRDPLS
AAAASAPDIM PQVADSVLRG LDGLADEDRT LLLDTFGAWL DSDGSAAEAA KRLFVHPNTV
RYRLRRLEER TGRLLANPRA VAELSLAYEI DCALIAEVGT GG
|
|---|
| |