Gene Caci_5762 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_5762 
Symbol 
ID8337123 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand- 
Start bp6660126 
End bp6660740 
Gene Length615 bp 
Protein Length204 aa 
Translation table11 
GC content69% 
IMG OID644958866 
Producttranscriptional regulator, TetR family 
Protein accessionYP_003116461 
Protein GI256394897 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.182054 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.0696367 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGTTGTCA AGCGGGAAGG CCCGACTCAC CGCCAGCGGC AGGCGCTGGC GACGAAGGAG 
CAGATCGCCG CGGCCGGAAG GAAGCTGTTC GCCGAACGCG GGTACGTCGC GACCACGATC 
ACCGCCATCT CCGAGGCCGC GGACATCCCC GTGCCGACCA TCTACTCGGC GTTCGGGAAC 
AAGGCCGCGA TCCTGAAGGA CATCACGCAG CGGGCCGTCG CGCCCCTGGA CGTGAAAGGC 
CGGTACGAGC AGGTGGTGGC CGACCCGGAC CCGGTGAGCG GCCTGCGCCG GGCGGCACAG 
ATGCAGCGCG AGCAGTTCGA GACCATGTAC GACGTCATGA CCGTCACGAT GGAAGCGGTC 
CGCACCGATC CCGAGATCGC CGAGATGCTG CGCGGGATCA TGGCCAGCCG GGAACGGGCC 
TACCGCGCGC ACCTGGAGAC CGTCGCCGCG CACCTGGCGC CCGCGATGAC CGTCGACGAG 
GGCGTGGACG TCTACGTCAC GCTGGTGCTT CCCGAGATCT ACCACAGCCT CGTCGTGGAA 
CGCGGCTGGA GCCCGGACCG CTATGAGACC TGGCTCGGCG ACAACCTCAT CCGGCAGCTG 
CTCGGGACGC GGTGA
 
Protein sequence
MVVKREGPTH RQRQALATKE QIAAAGRKLF AERGYVATTI TAISEAADIP VPTIYSAFGN 
KAAILKDITQ RAVAPLDVKG RYEQVVADPD PVSGLRRAAQ MQREQFETMY DVMTVTMEAV 
RTDPEIAEML RGIMASRERA YRAHLETVAA HLAPAMTVDE GVDVYVTLVL PEIYHSLVVE 
RGWSPDRYET WLGDNLIRQL LGTR