Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_5658 |
Symbol | |
ID | 8337018 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | + |
Start bp | 6522528 |
End bp | 6525050 |
Gene Length | 2523 bp |
Protein Length | 840 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644958762 |
Product | Ricin B lectin |
Protein accession | YP_003116358 |
Protein GI | 256394794 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.51688 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCGACACC CCCGCAAGAC CCTCGCGCTC GCTACCGCCG CCGCAGCGGT CGCGGCCGGG GCGCTTCTGC CTTCGCCGCA GGCCTCGGCA GCCTCGGCAG TCTCGGCGGC GTCCGCGACC CCCGCGTACC GCGTCAGCAT CGGCGCCGTG AACAGCTTCG CCTACCCTGA CGACACCCCG GCGTCGGCGT ATCTCGATTC CGACGGCTCC TTCCACTTCC AGGAGTCGTA TTCGCTGTAC GCCAAGACCG ACCCGCGCGC CTGGGAGTTC TACGCCGGGA CGGACTTCGA CGACGCGACG CTGGACACCG GGCTGAGCAG CGCGGTGAAC CCGGCCGATC CGCAGGACAA GAACAACGAC ACCACAGTGC GCTGCAACAA CAGCCCGACC GGGCTTGAGT CGACGTACAT GAACAACGGG ACCGGCTACT ACTCGCAGCG CAACTACTGC GACCTGTCCG GGACGTGGGT CGACCCGGAC AGCGGCGACT GGTACGGCTT GGTCCACAAC GAGTTCACGC CGCAGCCCTT CGGCGACGGC CTGCACTACG ACGCCATCGA CTACGCCGTC TCGCACGACC ACGGCAAGAC CTGGTCGATC CTCGGGCACG CGATCACCTC GCCGTACAGC ACGACCCGCA ACGACAGCGC CGCTTTCCCG AACCAGACCT ACGACTACGG CGACGGCGAC CAGCGCCTGT TCGTCGATCC CGCCTCGGGC TACTTCTACG TGTTCTACGG CTCGCGGGTC GTGAACAAGC CGGGCACCGG AGGCACGCAG ACCGGCGGGC TGGCGCACGT CGCACGCGCC CCGATCAGCG GCAAGATGGC CGCCGGGACC TGGCAGAAGT GGTACGACGG CGCCTGGACG CAGCCCGGCA TCGGCGGGCT GGAGAGCAAC ATGGAGCCGG TGGACGCCGC GAACCCGACC GGCTACACCG CGCCGGCACA CGACTACAAC CCGGCGAACA CCGGGACCGC CGACCAGCAG ATGGCCGCGG GCGAGCTGCC GGCCAAGTCG CCGCTGTTCA TCATGAACAT CACCTACGAC GCCTACCTCG GGTTGTACAT CGGCGAGCCG GAGACGGTCG GCCAGACCGG CAAGGAGCCG CAGCAGTTCT ACGCCACCGA CAACCTGGCG ACGCAGAAGT GGCGCCTGAT CGGCGACTCG GGCAGCTATG TGTCAGGGTC CTGGTATCGG TGGTTCGCTG ACGACGCCAA CAAGTGGAGC CCGACGATCG TCGGCGAGAC GTTCCGCTCG TACTGCTCGA TCGCGTGCGC GACCTCCGAC GGGGAGTACG CGGACGTGAC GATCGGCAGC TCGGCGCCGG CCAAGCCGGT GGTCGCACCG GGTCAGAACG TCGTCATCAA CAGCGGCAAC GGCCGGGTGC TGGCGCAAAG CGCGGGCAGC TCGAAGGTGA CGTCGCTGGA CGCGTCCTAC GGCTGGGCGC AGGCGGCGTG GACGATCGCG GCGACCGGCG ACGGCTCGTA CACCGTCGTG AACGCCGTAT CCGGGGACGC GCTCGGGGTG GACTCCTCGA AGACCTCCTC GCGCGCCTGG GGCACGACGC CGTCGGCGAC ACCGATCGGC GCCTCCGGTC CGACCGTGGG CCAGGAGTGG TTCGCGGTAC CGAACACCTC CTCGCCGGGC TCCTTCCGGC TGGTGAACCG GGACAGCGGA CTGGCGCTGG GGATGGCGTG GGACTCCGCG CGCTCGGCGG AGACCACGCC GGTGCGCTCC TGGACCGACA CCTCCGGCAA CGCGGTCGGC GGCGGTCGGC AGCCCTCGGA GCAGACGCTG ACCTTCTCCC CGGCGCATCC GGCGCAGGGA CCTGAGGTCG TGCACATGGC GACGCCGGGG AACCAGAGCG GCGTGGTCGG CACGGCGGCG AGCGTGCAGG TGAACGGCAG CGACTCCAAG GGCCGCCACC TGAGCTACAC GGCGACCGGC CTGCCCGCCG GCCTGTCGAT CAACGCCGGC AGCGGTCTGA TCACCGGGAC GCCAACCGCT TCGGGCATGT CCACGGTGAC GGTGACCGCG TCCTCCGGGC ACGTCTCGGC GAGCGCCACG TTCACCTACG CGGTGAGTCC GAAGCCTGTG GACCTGTCGG GCGTGCACAC GCTGACGGTG TCGGGACAGG CGTTGCAGAC GCCGAACGGT TCGAAGAACG GTGGCGACCA GCTGGTGACC GGCGCCGCGA CGGGAGCGGC GACTGGCGCG GCGAGCCAGA AGTGGACGTT CGCCCGGCAG AGCGACGGCA GCTACACGCT GACGAACGGC GACTCAGGCA TGTGTGCCGA CGACAACGGC GGCAATACGG CTGCGGGGAC AGCGGTGATC CAGTGGTCGT GCACGGCGGC GGTGAACCAG CGCTGGAGTG CGACACAGCT GCCGTCGGGG TTGTGGACGG TGAAGAACAA CCACACCGGA CTGCTGATGA CGACCGCTTC CACGGCTGCC GGCGCGCTGG TGACGCAGGA GGCTGACACT GGGGCTGCGT TGCAGCACTG GACGCTGAGC TAG
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Protein sequence | MRHPRKTLAL ATAAAAVAAG ALLPSPQASA ASAVSAASAT PAYRVSIGAV NSFAYPDDTP ASAYLDSDGS FHFQESYSLY AKTDPRAWEF YAGTDFDDAT LDTGLSSAVN PADPQDKNND TTVRCNNSPT GLESTYMNNG TGYYSQRNYC DLSGTWVDPD SGDWYGLVHN EFTPQPFGDG LHYDAIDYAV SHDHGKTWSI LGHAITSPYS TTRNDSAAFP NQTYDYGDGD QRLFVDPASG YFYVFYGSRV VNKPGTGGTQ TGGLAHVARA PISGKMAAGT WQKWYDGAWT QPGIGGLESN MEPVDAANPT GYTAPAHDYN PANTGTADQQ MAAGELPAKS PLFIMNITYD AYLGLYIGEP ETVGQTGKEP QQFYATDNLA TQKWRLIGDS GSYVSGSWYR WFADDANKWS PTIVGETFRS YCSIACATSD GEYADVTIGS SAPAKPVVAP GQNVVINSGN GRVLAQSAGS SKVTSLDASY GWAQAAWTIA ATGDGSYTVV NAVSGDALGV DSSKTSSRAW GTTPSATPIG ASGPTVGQEW FAVPNTSSPG SFRLVNRDSG LALGMAWDSA RSAETTPVRS WTDTSGNAVG GGRQPSEQTL TFSPAHPAQG PEVVHMATPG NQSGVVGTAA SVQVNGSDSK GRHLSYTATG LPAGLSINAG SGLITGTPTA SGMSTVTVTA SSGHVSASAT FTYAVSPKPV DLSGVHTLTV SGQALQTPNG SKNGGDQLVT GAATGAATGA ASQKWTFARQ SDGSYTLTNG DSGMCADDNG GNTAAGTAVI QWSCTAAVNQ RWSATQLPSG LWTVKNNHTG LLMTTASTAA GALVTQEADT GAALQHWTLS
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