Gene Caci_5595 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_5595 
Symbol 
ID8336955 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand+ 
Start bp6449460 
End bp6450125 
Gene Length666 bp 
Protein Length221 aa 
Translation table11 
GC content70% 
IMG OID644958699 
Productpentapeptide repeat protein 
Protein accessionYP_003116295 
Protein GI256394731 
COG category[S] Function unknown 
COG ID[COG1357] Uncharacterized low-complexity proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.816187 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.894439 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCAGCA TGCCATCTTC ACAACCGATC CCGCCGGCCC GCCCCGACCT GCCGCCCTTA 
GCCGAGCTGG CGCCGTTGGA CTCCCGGGTG CGCGACGAGG GCCAGTACGA ATACCAGCGA 
GTCTCGGAGG TGAGCTGGGA CGACGTCTTC GCCAGCCACG CCCGGTTCAG CCAGTGCCTG 
CTGGCCGAGG TGACGGTGGT CGGCGGGGAA TGGAGCAAGA CCACGTTCGC CGACGTCCGC 
CTGGAGGATT CGCGGCTGCT CGGACCGGAC CTGTCGGCCT CGCACTGGCG GGACACCGAA 
CTGGTCCGCG GCATCGCCTC CGGCGTGCAG TGGCACGACG CGGACGTGCG GCGCGTGCAC 
TTCGACCAGG TGAAGCTGGA CGCGGTGAAC TTCCGCGGCG CCGCCCTGAC CGACGTGGTG 
TTCACCGACT GCCTGTTGCG CGAGGCCGAT TTCGGCGGCG CCAAGCTGAC GCGCGTGCGC 
TTCCCGGGCT GCACCTTCGA AGAGGCCGAC TTCAGCCGCG CCAAGCTCGC CGACGTGGAT 
CTGCGCGGTG CGCGCCTGCA CTTCAAGGCC GGGCTGGACG CGTTGCGCGG CGCCACGATC 
GACGGCGGTC AGCTGGTCGA GCTCGCGCCG GCGATCGCGG CGCATCTGGG ACTGCGGATC 
GGGTGA
 
Protein sequence
MISMPSSQPI PPARPDLPPL AELAPLDSRV RDEGQYEYQR VSEVSWDDVF ASHARFSQCL 
LAEVTVVGGE WSKTTFADVR LEDSRLLGPD LSASHWRDTE LVRGIASGVQ WHDADVRRVH 
FDQVKLDAVN FRGAALTDVV FTDCLLREAD FGGAKLTRVR FPGCTFEEAD FSRAKLADVD 
LRGARLHFKA GLDALRGATI DGGQLVELAP AIAAHLGLRI G