| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_5158 |
|---|
| Symbol | |
|---|
| ID | 8336512 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 5924245 |
|---|
| End bp | 5924913 |
|---|
| Gene Length | 669 bp |
|---|
| Protein Length | 222 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644958256 |
|---|
| Product | HAD-superfamily hydrolase, subfamily IA, variant 1 |
|---|
| Protein accession | YP_003115858 |
|---|
| Protein GI | 256394294 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
|---|
| TIGRFAM ID | [TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0832547 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.0266654 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGTTCG CCTTCTTCGA CCTCGACGAC ACCCTCGTGG ACGCCAAGGC GGCCCTGCGC
GCCTGGTCCC TGGACTTCGC CGCCGAGTAC GTCCCCGGCG GTCCCGACGC CGCCGCCGAT
GTCTTCCTCC GCGTGGTCGC CGCCGAAAGC TGGCCGGGCT TCGTCGCCGA CGCCCGCGCG
CACTACGGCA TAACCGCCCC CGACGAGGAA CTCATGGCGC AGGTCGCCGC GGTGTTCCCG
GGCAAGTTCG TGTTGGAGCA CCAGGTCCGC CGCGCGCTGA CCGAGCTGCG CGGCGAAGGC
TGGCGCCTCG GCGTGGTCAC CAACGGATCC ACCGCCGTGC AGCAGGCCAA GGTGGACAGC
GTCGGACTGC GCCCCCACGT CGACGCGGTC ATCGACTCCG AAGCCGCCGG CCACCGCAAA
CCGCATCGCC GGATCTTCGA GATAGCAGCC CACGAACTCG GCGTCGAGCT GGGACCGCAC
GGCTGGATGG TCGGCGACCG GCTGGACAAG GACATCGCCG GGGGAGCGGC CGCCGGACTG
CGGACCATCT GGATCTCGCA GGGCGAGGCG CTGCCCGAGG TGATGCCCGA GGGGGTTTCG
CGGCCGACGC ACGTCGTGGC GACGATCGCT GAGGCGTTCG CGATCGTCCG AGCGTCCAGC
TCGGTGTGA
|
|---|
| Protein sequence | MRFAFFDLDD TLVDAKAALR AWSLDFAAEY VPGGPDAAAD VFLRVVAAES WPGFVADARA
HYGITAPDEE LMAQVAAVFP GKFVLEHQVR RALTELRGEG WRLGVVTNGS TAVQQAKVDS
VGLRPHVDAV IDSEAAGHRK PHRRIFEIAA HELGVELGPH GWMVGDRLDK DIAGGAAAGL
RTIWISQGEA LPEVMPEGVS RPTHVVATIA EAFAIVRASS SV
|
|---|
| |