| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_4938 |
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| Symbol | |
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| ID | 8336292 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | - |
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| Start bp | 5636427 |
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| End bp | 5638103 |
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| Gene Length | 1677 bp |
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| Protein Length | 558 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644958037 |
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| Product | ABC-type sugar transport system periplasmic component |
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| Protein accession | YP_003115639 |
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| Protein GI | 256394075 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.000971011 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGAGCA CCAACGCCTT CACGCGCCGC GGATTCCTCG CGGCCTCCGC CGGCGCCGCC
GGCGCGATCG GGCTGTCCCC GCTGCTGGCG GCCTGCGGCA ACAACGGCGG CAAGGGCGGG
GCGAGCACCA AGGCGGCGAT CCAGGCCGTG CTGCCGACGT ACAAGCCGCT GTCCGGCGGG
GTCACCCCCG ACATCCCGTC CGTGCCGGGC ACGAACGGCG CCATGACCGA CCCGGGTTTC
CTGAAGTACC CCAGCACCCT GCCGAAGACG GTGACCGGCC AGGTCGGCTC CGGCGGGAGG
TACGCCGGCG TCGCGCCGTC GTGGAACCCG GTCCCGCCGG CCGGCAACTC CTACTACGAG
GCGGTGAACA AGGCGCTCGG CGCGACCTTC GTCTCCCAGC CGGCCAACGG CAACACCTAC
AACACCGTCA TCCCGCCGCT GATCGCCGCG GACAAGCTGC CGGACTGGCT GTCCATCCCG
GGCTGGCTGA ACCCCACCTT CGACACCGGC GGCCTGGTCG GCACCAAGCT GGCCGACCTG
ACGACCTACC TCGGGGGCGA CGCGGTCCTG GAGTACCCGA ATCTCGCGGC CATCCCCAGC
GGCGGCTGGA AGTGCGGGAT CTGGAACAAC CGGCTCTACG GCATCCCGTC GCAGACCGAC
AGCCTGAGCT TCGCCGGCGC CATCTACTAC CGCAAGGACC TGCTGGACGC CAAGGGCATC
ACCCCGAACG TCAAGACCGC GCAGGACTTC GAGGCCCTCG GCCGGGAGAT CAACAACCCC
GGCGGCGGCG TGTGGGCGTT CGACGACATG CTGGTGTACC TCTACCAGGT CTTCAAGGTG
CCGCTGGGCG GGTGGTACCT GGAGAACGGC AAGATCAAGA ACGTCGGCGA GCACCCCGCC
ATGCTGGAGT GCCTGGCCTG GGCCAACAAG ATCGCCAAGG CCGGGTTGGT CCACCCCGAC
GCGATCGCCG GAGTGAACAC CAGCAACCCC AGCCGGTTCA TGGCCGGCAA GGTGTACATC
GAGGCCGGCG GCATGGCCGG CCTGAGCGGC CCGGACGCGA AGAACGGCAC CGCGGGCAAG
GCCGGCTACC AGCGCGCGCT GTTCCCGCTG TTCTCCTCCG ACGGTTCGAC CCCGAGTATC
GGCCTGGGCG GCTCCTCGGG CTGGATGAGC TATCTGAACA AGAATCTGAA CCCGGAGCAG
ATCAAGGAGT GCCTGCGGAT CGCGAACTTC TTCGCCGCGC CGTTCGGGTC CTTCGAGTAC
AACCTCCTCA ACTACGGAGT CGAAGGCGTC CACTACACGA TGGGCCCTGA AGGACCGGTG
TTCACCAAGG AGGGCTCCAA CACGGCGGCC GACGGCATAT TCGGCTTCTT CAGCACCGCT
CAGACCGCGG TCTACAACGC GGGGTACCCC GACGTCACCA AGGCCATGGA GGCTTGGTGC
GCCGACGCGG CCAAGCACGC CTACAAGCCG ATGTTCTGGA ACCTGAACAT CAGCGTGCCC
AGCCAGTTCT CCAAAACCGC CGCCCAGACC GAGTTGTGGG ACGCGACGCA GGCGGTGGCG
CACGGAAAGC AGCCGGTGTC GTACTACCAG GACGCGTACT CCCGGTGGAA GAGCGGCGGC
GGCGACGCCC TGGGGACCTG GTACCAGCAG AACCTTATTG ACAAGGGCCT CAGCTAG
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| Protein sequence | MSSTNAFTRR GFLAASAGAA GAIGLSPLLA ACGNNGGKGG ASTKAAIQAV LPTYKPLSGG
VTPDIPSVPG TNGAMTDPGF LKYPSTLPKT VTGQVGSGGR YAGVAPSWNP VPPAGNSYYE
AVNKALGATF VSQPANGNTY NTVIPPLIAA DKLPDWLSIP GWLNPTFDTG GLVGTKLADL
TTYLGGDAVL EYPNLAAIPS GGWKCGIWNN RLYGIPSQTD SLSFAGAIYY RKDLLDAKGI
TPNVKTAQDF EALGREINNP GGGVWAFDDM LVYLYQVFKV PLGGWYLENG KIKNVGEHPA
MLECLAWANK IAKAGLVHPD AIAGVNTSNP SRFMAGKVYI EAGGMAGLSG PDAKNGTAGK
AGYQRALFPL FSSDGSTPSI GLGGSSGWMS YLNKNLNPEQ IKECLRIANF FAAPFGSFEY
NLLNYGVEGV HYTMGPEGPV FTKEGSNTAA DGIFGFFSTA QTAVYNAGYP DVTKAMEAWC
ADAAKHAYKP MFWNLNISVP SQFSKTAAQT ELWDATQAVA HGKQPVSYYQ DAYSRWKSGG
GDALGTWYQQ NLIDKGLS
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