| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_4923 |
|---|
| Symbol | |
|---|
| ID | 8336277 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 5613039 |
|---|
| End bp | 5614619 |
|---|
| Gene Length | 1581 bp |
|---|
| Protein Length | 526 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 644958022 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_003115624 |
|---|
| Protein GI | 256394060 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1129] ABC-type sugar transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.729483 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCACCA TCCCGCCCGT CGTCCAGGCG ACGGACGTCA CCAAGCGCTT CGGGTCGACG
GTGGCGCTGC ACGCCGCGCA CATCACCGTC GAGCCGGGAC AGACCCACGC TCTCGTCGGC
CGCAACGGCG CCGGGAAATC CACGCTGGTC TCGGTCCTGA CCGGGCTGCA AGCCCCGGAC
GAGGGGACGA TCACCTTCGA CGGACAAGAC GCGCCCCGCC TCGCCGACCG GGACGCCTGG
CGGCAGCGGG TCGCCTGCGT GTATCAGAAG TCGACGATCA TCGGCCAGCT GACGGTCGCG
GAGAACCTGT TCCTGAACCG GCACGACCGC CGCCGCGGCC TGATCAGCTG GCGCACCGTG
CACCGCCGGG CCCGGGACCT GCTGGCGACC TGGTCGGTGG ACGTCGACGC CGGCGCCGCC
GCCGCCGGCC TGAGCGTCGA GCAGCGGCAG TTCGTGGAGA TCGCCCGGGC GCTGTCCTTC
GGCGCCCGCT TCATCGTCCT GGACGAACCC ACCGCCCAGC TCGACGGCGC GGCGATCACC
CGGCTGTTCG ACCGGATCCG CGAGCTGCAG GAGCAGGGGG TCACCTTCCT GTTCATCAGC
CACCATCTGG AGGAGGTCTA CGAGATCTGC GACACCGTGA CCGTCTTCCG CGACGCCCGG
CACATCCTCA CCGCCCCGGT GGCCGAGGTG CCGCGCGCCG ACCTGGTCGC GGCGATGACC
GGCGAGGCGG CCCGGGCCGA GCGCGCGGCG CACCCGCGCC GCTTGCAGAC CGATCCCTCC
GCCGACGGAG CCGGGGACGG AGCCGGAGCC GGAGCCGGGG ACGCGTTGTC CCTGACCGGC
CTGTCCGCGG CCGGCGCCTA CGACGACGTC TGGCTCACCG TGCGTGCCGG CGAGATCGTC
GGGCTGGCCG GCGCCGCGAG CAGCGGCCGG ACCGAGGTCG CCGAGACCGT GGTCGGCCTG
CGCGCCGCGA CGAGCGGACA GCTCACCGTC CGCGGACGGC GCCCCCGGCC CGGCAGCGTC
CGCTCCGCCC TGGCCGCCGG CGTCGGCTTC GTGCCCCAGG ACCGGCACCA CCAGGGCTAC
GTCCCGGAGA TGTCCGTGGC GGACAACGGC ACCCTCACCG TCACCGAACG GCTCGGCCGC
TCGGGGTTCA TCGACCACCG GCGCCGCGAC GCCCTGGCCG CCGCGCAGAT CGAGAACCTG
GCCATCAAGA CCTCCGGACC CGGACAGAAC GTGTCCGGGC TGTCCGGCGG CAACCAGCAG
AAGGTGGTCA TGGCCCGCGC GCTGGCCTCC GATCCCGCGC TGCTGGTGCT GATCACCCCG
ACCGCCGGCG TGGATGTGCG GTCCAAGGAG TTCCTGCTCG ACAAGGTCGA GGAGACCGCC
GCGCGCGGCA CCGGCGTCCT GATCGCCTCC GACGAACTGG ACGACCTGCG CGGGTGCGAC
CGCGTCGTGG TGATGTTCGG CGGGCGGACG GTGGCCGAGA TGGAGCGCGG CTGGCACGAC
CACGCGCTGG TGGCCGCCAT GGAAGGGATG GGAGCAGGGA TGGGAGCAGG AATGGCAGAA
GGGACCGGAT CCGATGCCTG A
|
|---|
| Protein sequence | MTTIPPVVQA TDVTKRFGST VALHAAHITV EPGQTHALVG RNGAGKSTLV SVLTGLQAPD
EGTITFDGQD APRLADRDAW RQRVACVYQK STIIGQLTVA ENLFLNRHDR RRGLISWRTV
HRRARDLLAT WSVDVDAGAA AAGLSVEQRQ FVEIARALSF GARFIVLDEP TAQLDGAAIT
RLFDRIRELQ EQGVTFLFIS HHLEEVYEIC DTVTVFRDAR HILTAPVAEV PRADLVAAMT
GEAARAERAA HPRRLQTDPS ADGAGDGAGA GAGDALSLTG LSAAGAYDDV WLTVRAGEIV
GLAGAASSGR TEVAETVVGL RAATSGQLTV RGRRPRPGSV RSALAAGVGF VPQDRHHQGY
VPEMSVADNG TLTVTERLGR SGFIDHRRRD ALAAAQIENL AIKTSGPGQN VSGLSGGNQQ
KVVMARALAS DPALLVLITP TAGVDVRSKE FLLDKVEETA ARGTGVLIAS DELDDLRGCD
RVVVMFGGRT VAEMERGWHD HALVAAMEGM GAGMGAGMAE GTGSDA
|
|---|
| |