Gene Caci_4881 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_4881 
Symbol 
ID8336235 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp5556864 
End bp5559095 
Gene Length2232 bp 
Protein Length743 aa 
Translation table11 
GC content70% 
IMG OID644957980 
Productglycoside hydrolase family 6 
Protein accessionYP_003115582 
Protein GI256394018 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG5297] Cellobiohydrolase A (1,4-beta-cellobiosidase A) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.106483 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCTGGT GGGGCGTCCA AGCGGCTCAG GCAACGTCAG TAGCCCCGGC AGCGGCGGCA 
GCCGCGCACG CGGCCAACCC CTTCGTCGGG TCGAGCCCGT ATCTGAACCC TGACTACGTC
TCCGAGGTCC AGTCGCAGGC GTCCGCCGAC GGCAGCTCCG CCGAGGCCAA GGTCGGCGCG
TACCAGACCG CGATCTGGAT GGACCACATC GGCGCGATCG CCGGCGACAG CAGCCACCTG
GGCCTGAAGG CGCAGCTGGA CAAGGCCGAG ACGCAGGCCG CCGGGACCAC CAGCCCGGTG
GAGGTCGAGG TGGTCGTCTA CGACCTGCCC GGCCGGGACT GCGCGGCGCT GGCCTCCAAC
GGCGAGATCC CGGCGACCGA CGCCGGGCTG ACCCAGTACG AGTCGCAGTA CATCGACCCG
ATCGTGGCCA TCGAGGGCGC CTCGGGCTAC AGCAACCTGC GGATCGTGAA CTTCGTCGAG
CCGGACTCGC TGCCCAACGC GGTCACCAAC CAGAGCAAGT CCGCGTGCGC CGCCGCGACG
CCCTACTACG AGAAGGGCAT CGCCTACGCG CTGGGCAAGC TGCACGGGAT CGGCTCGCAG
ATCTACAACT ACCTGGACAT CGGCCACTCC GGCTGGCTCG GCTGGCCCAA CAACATGACC
GGCGCCGGTC CTGAGTACGC CAAGGTCGTG CAGGCCGCGA CCGGCGGCTA CGCGACGGTC
GACGGCTTCG TCTCGGACAC CGCGAACACC ACCCCGTCCG ACGAGCCGTT CCTGCCGAAC
TCCAACCTCA CCGTCGGCGG CCAGCCGCTG AAGTCGGCGA ACTTCTACCA GTACAACCCG
TACTTCGACG AGCACAGCTA CGACGAGGCG ATGTACAGCG AGTTCGTCTC CAGCGGCTTC
CCGTCCAGCG TGGGCATGAT CATCGACACC TCGCGCAACG GCTGGGGCGG CACGTCCCGG
CCCACCTCGC TGAACTCCAG CCCGACCGAC GTCAACAGCT ACGTGAGCGC GAACAAGGTC
GACCTGCGGC CGTTCCGCGG CGACTGGTGC AACGTCAACG GCGCGGGCAT CGGCGCGCGG
CCGCAGGCCA ACCCCTACGG CTCCGGCGAC CACGTCATCG CCGACGTGTG GATCAAGCCC
CCGGGGGAGT CGGACGGCGA CTACCCGAGC TCCTCGCACT CGCACGGCGA CCCGCACTGC
GACCCGGCCG GCACCCAGAC CGACGGCAAC GGCGGCACCT ACCCGACCGA CGCCATCCCC
GGCTACGACG TCCCGGCCGG ACAGTGGTTC GCCTTCCAGT TCAAGCAGCT GGTGCAGAAC
GCCTACCCGG CCCTCGGCGG GACCACCGGC GGCGACACCA CGCCGCCGAG CGCGCCCAGC
GGCCTGACCG TGGCCTCGAA GACCAGCAGC AGCGTCTCGC TGACCTGGAC CGCCTCGACC
GACAACGTCG GCGTGACCGG CTACGACATC TACCGCGGCA CGACGCTGGC CGGCACCTCG
GCCACCCCCA GCTTCACCGA CACCGGCCTG ACCGCCTCGA CGCAGTACTC GTACACGGTC
AAGGCCTTCG ACGCCGCGGG CAACCTCTCC TCGGCCTCCA GCGCGGTCAC CGCCACCACC
AGCGGCGGCT CCACCGGCGG TGACACCACG CCGCCCTCGA CCCCGACCAA CGTCACCGCC
AGCGGCGTGA CCAGCACCGG CGCCACCCTG TCCTGGTCGG CGTCCACGGA CAACGTGGGC
GTGGCGGGCT ACCACGTCTA CCGGAGCGGC ACCCTGGTCG GCACCACGAC CACCACGTCC
TTCGCCGACA CCGGCCTGAC CGCCTCGACG CAGTACTCGT ACACCGTGGT CGCCTACGAC
GCGGCGGGCA ACCTCTCCCC GGCCTCCGCC GCGGTGTCGG TGACGACCTC GGGCGGCAGC
ACCGGCGGCT CCGGCTGCGC CGCCACCTAC CAGATCGGCA GCGACTGGGG CAGCGGCTTC
ACCGCCAACG TCACCGTCAC CAACACCGGC ACCGCCCCGA CCAAGTCCTG GAAGGTCACC
TGGACCTGGG CCGGCAACCA GCAGGTCACC AGCATGTGGA ACGCCGCCAG CCAGCAAAGC
GGCCACAGCG AGACCGCCAC CAGCATGGCC TACAACGGCG CGATCGCGGC CGGAGGCAAC
ACCACCTTCG GCTTCCAGGG CACCTACAGC GGCAGCAACG CCAACCCGAC GCTCACCTGC
AGCGCCAGCT GA
 
Protein sequence
MPWWGVQAAQ ATSVAPAAAA AAHAANPFVG SSPYLNPDYV SEVQSQASAD GSSAEAKVGA 
YQTAIWMDHI GAIAGDSSHL GLKAQLDKAE TQAAGTTSPV EVEVVVYDLP GRDCAALASN
GEIPATDAGL TQYESQYIDP IVAIEGASGY SNLRIVNFVE PDSLPNAVTN QSKSACAAAT
PYYEKGIAYA LGKLHGIGSQ IYNYLDIGHS GWLGWPNNMT GAGPEYAKVV QAATGGYATV
DGFVSDTANT TPSDEPFLPN SNLTVGGQPL KSANFYQYNP YFDEHSYDEA MYSEFVSSGF
PSSVGMIIDT SRNGWGGTSR PTSLNSSPTD VNSYVSANKV DLRPFRGDWC NVNGAGIGAR
PQANPYGSGD HVIADVWIKP PGESDGDYPS SSHSHGDPHC DPAGTQTDGN GGTYPTDAIP
GYDVPAGQWF AFQFKQLVQN AYPALGGTTG GDTTPPSAPS GLTVASKTSS SVSLTWTAST
DNVGVTGYDI YRGTTLAGTS ATPSFTDTGL TASTQYSYTV KAFDAAGNLS SASSAVTATT
SGGSTGGDTT PPSTPTNVTA SGVTSTGATL SWSASTDNVG VAGYHVYRSG TLVGTTTTTS
FADTGLTAST QYSYTVVAYD AAGNLSPASA AVSVTTSGGS TGGSGCAATY QIGSDWGSGF
TANVTVTNTG TAPTKSWKVT WTWAGNQQVT SMWNAASQQS GHSETATSMA YNGAIAAGGN
TTFGFQGTYS GSNANPTLTC SAS