| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_4728 |
|---|
| Symbol | |
|---|
| ID | 8336082 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 5393564 |
|---|
| End bp | 5395282 |
|---|
| Gene Length | 1719 bp |
|---|
| Protein Length | 572 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644957828 |
|---|
| Product | glyoxylate carboligase |
|---|
| Protein accession | YP_003115430 |
|---|
| Protein GI | 256393866 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3960] Glyoxylate carboligase |
|---|
| TIGRFAM ID | [TIGR00118] acetolactate synthase, large subunit, biosynthetic type
[TIGR01504] glyoxylate carboligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATGC CCGTGATGAA CGCGGTGGTG CAGGTCCTGA AGTCCGAGGG CGTCGACGCC
GCCTTCGGCT GCCCGGGAGC GGCGATCCTG CCGCTGTACA AGGCGATGGA GGACGAGGGC
GGCATCGACC ACCTGATCGT GCGCCACGAG GAGGGCGCCA CGCACATGGC CGACGGCTGG
GCCCGGACCA ACGGCCGGGT CGGCGTGGCC ATCGGCACCT CCGGTCCGGC CGGGACGAAC
ATGATCACCG GTCTGTACAC GGCGATGGCC GACTCGATCC CGATGATCGT GATCACCGGC
CAGGCCGTGT CCACGGCGCT GGACAAGGAG GCGTTCCAGG CCGTCGACAT CGTCGGCTGC
GCCACGCCGG TGACGAAGTG GGCGGTGCAG ATCAAGGAGG CGGCGACCGC GCCGTGGATC
TTCCGCGAGG CGTTCCGCGT CGCCCGCTCG GGACGTCCCG GACCGGTGCT CGTCGACATC
CCACTGGACG TCGCCAAGCA GGTCATCGAG TACGACGCCG AGCTCGACGC GCCGCTGCCG
GTGCCGGTGG TCGAGCCGCA CGCGCCGCGC GTGGAGAAGG CGCTGGACCT GCTGCTGGCC
GCCGAGCGTC CGCTGATCCT GGCCGGCGGC GGTGTGATCA TCGCCGACGC CGCGCCGGAG
CTGCGCGAGC TGGTCGCCTA CCTGGGGATC CCGGTGCAGG TGACGCTGAT GGGCAAGGGC
GCCGTGGACG AGGACGACCC GCTGTACGCG GGGATGACCG GCGTGCAGAC CTCGCAGCGG
TACGGGAACG CCTCGTTCCT GGAATCAGAC CTCGTGCTCG CCGTCGGCGC CCGCTTCGGC
GACCGGCACA CCGGGACGCT GGAGGTGTAC CGGGGGGAGC GGACGTTCAT CCACGTCGAC
ATCGAGTCCA CGCAGCTGGG CCGGGTGTTC GAGCCGGACC TGGGGATCGT GTCGGACGCG
AAGCTGTTCC TGCGGGCGCT GCTCGCCGCG GCGAAGGCCC GGGGCGTCGG GGGACGCGGA
CCGGCCCAAT GGGTCGCCCG GGTCGGATCG CTGAAGACCT CCCTGACCCG GCGTGAGGAC
TTCGACTCCG TGCCGATCAA GGCGCCGCGC GTCTACAAGG AGATCAACGA GATCTTCGAC
CCCTCGACCT ACTTCGTGAC CGCGATCGGG CTCTACCAGA TCTGGGGCGG CCAGCATCAG
AAGGCGTACC AGCCGCGCCG GTACCAGGTC TGCGGCCAGG CCGGACCGCT GGGCTGGGAG
ATCCCGGCGG CGATCGGGGT GAAAACCGCG CTGCGGCACA CCGAGCCGGA CGCCGAGGTC
GTCGGCATCG TCGGCGACTA CGGCTTCCAC TTCCTGGTGG AGGAGCTGGC GGTCGGCGCG
CAGTACGACG TCCCCTTCGT CCTGATCATG CTGAACAACG AATACCTCGG CCTGATCCGC
CAGGCATCGG CCGGCTACGA AATGAACTAC CAGGTCGACA TCCACTACGA CGACTACGGC
ACCGACAACG TCAAGATCAT GGAGGCCTAC GGATGCTCGG GACGCCGCGT GTTCGCCCCT
GACGAGATCC GCCCCACCCT GGAGTGGGCG CGCAAGCAGG CAGCGGCCAC CAGCCGCCCC
GTGCTCGTCG AGATCATGAT CGAGCGCGAA GCCAACACCC CCCACGGCCC GGCGATCAAC
GCCGTCCGCG AATTCGAACC CCTCCCCGAG CAGCCGTGA
|
|---|
| Protein sequence | MKMPVMNAVV QVLKSEGVDA AFGCPGAAIL PLYKAMEDEG GIDHLIVRHE EGATHMADGW
ARTNGRVGVA IGTSGPAGTN MITGLYTAMA DSIPMIVITG QAVSTALDKE AFQAVDIVGC
ATPVTKWAVQ IKEAATAPWI FREAFRVARS GRPGPVLVDI PLDVAKQVIE YDAELDAPLP
VPVVEPHAPR VEKALDLLLA AERPLILAGG GVIIADAAPE LRELVAYLGI PVQVTLMGKG
AVDEDDPLYA GMTGVQTSQR YGNASFLESD LVLAVGARFG DRHTGTLEVY RGERTFIHVD
IESTQLGRVF EPDLGIVSDA KLFLRALLAA AKARGVGGRG PAQWVARVGS LKTSLTRRED
FDSVPIKAPR VYKEINEIFD PSTYFVTAIG LYQIWGGQHQ KAYQPRRYQV CGQAGPLGWE
IPAAIGVKTA LRHTEPDAEV VGIVGDYGFH FLVEELAVGA QYDVPFVLIM LNNEYLGLIR
QASAGYEMNY QVDIHYDDYG TDNVKIMEAY GCSGRRVFAP DEIRPTLEWA RKQAAATSRP
VLVEIMIERE ANTPHGPAIN AVREFEPLPE QP
|
|---|
| |