Gene Caci_4627 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_4627 
Symbol 
ID8335981 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp5264590 
End bp5265441 
Gene Length852 bp 
Protein Length283 aa 
Translation table11 
GC content73% 
IMG OID644957727 
Productpolysaccharide deacetylase 
Protein accessionYP_003115329 
Protein GI256393765 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0726] Predicted xylanase/chitin deacetylase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0474117 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.00736578 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCTGCTGG GGGGATGCGC GTCCACCGGC AAACCCGTGG CGGTCCGGCC GGCCGGCGCC 
ACGACCCCGA CGGCCGGCGG CAGTCCCAGA TCCCGCCCGA CCACCGGCGG CGCGCCCTTT
CCCGGACAGA GCCCGGCCAG CCCCGGCACC AGCCCCGCCG GCGGCGACAC CTCCACCGCC
CCGGGCGACT CGCACAGCAA CGGCTCCGCG CCGCCGGACA GCTCCCCGCC GCCGAGTGCC
ACCGGACAGG ACCCGCCGCC GCCGGCCGGC CACCCGCAGT TCTACGTCCA CGAAGGCGAC
AAAGCCATAG CCCTGACCAT CGACGACGGG CCCAGCAGCA AGTACACCCC GCAGGTGCTG
GCGCTGCTGG CGCAGTACAA GATCCCGGCG ACGTTCTGCA TGATCGGCCA GAACGCCGCC
CAGCACGCCT CCCTCGTGGC CGAGGTCAGT GCCGCCGGCC ACCTGGTCGC CAACCACACC
TGGACCCACC CGAACCTGGC CAAGATGAGC GAGGCCCAGG TCACCGCCGA GATCGAGCGC
ACCAACGACG CCATCACCAA AGGCGGCGCC CGCCAGCCGG TCCTGTTCCG CGCCCCCGGC
GGCAACTGGT CCCCGACCGT GTTCTCGGTC TGCGCCAAAC TGGGCCTGCG CGCCCTGGAC
TGGTCGGTCG ACCCCCGCGA CTGGTCCCGC CCCGGCACCG ACCACATCGT GCAGACCGTG
ATGGGCCACA CCCACACCGG CTCGATCATC CTGGAACACG ACGGCGGCGG CGACCGGTCC
CAGACCGTGG CCGCGCTGCA GCGGTTCCTG CCGCAGCTGC TCGAAGCGGG GTACAAGTTC
GTACAGCCCT GA
 
Protein sequence
MLLGGCASTG KPVAVRPAGA TTPTAGGSPR SRPTTGGAPF PGQSPASPGT SPAGGDTSTA 
PGDSHSNGSA PPDSSPPPSA TGQDPPPPAG HPQFYVHEGD KAIALTIDDG PSSKYTPQVL
ALLAQYKIPA TFCMIGQNAA QHASLVAEVS AAGHLVANHT WTHPNLAKMS EAQVTAEIER
TNDAITKGGA RQPVLFRAPG GNWSPTVFSV CAKLGLRALD WSVDPRDWSR PGTDHIVQTV
MGHTHTGSII LEHDGGGDRS QTVAALQRFL PQLLEAGYKF VQP