| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_4615 |
|---|
| Symbol | |
|---|
| ID | 8335969 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 5252103 |
|---|
| End bp | 5253536 |
|---|
| Gene Length | 1434 bp |
|---|
| Protein Length | 477 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644957715 |
|---|
| Product | putative transcriptional regulator, Crp/Fnr family |
|---|
| Protein accession | YP_003115317 |
|---|
| Protein GI | 256393753 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0664] cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.465429 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0000920675 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACGATCA CTCCGGACCG CACCGCCGAG CAAGCGCCCG AGGATCCCGC CGCCACGGAC
TCGCCGCTGT CCCTGAGTAC TGATGCGGCC CGCAATCTGG CCACCACCAC CAAGACGCAG
CCGCAGATGC GCGGCATCAC CTCCCGCTGG CTGCTGCGGC GCCTGCCGTG GGAGGAGGTC
TCCGGCGGCA CGTACCGGGT GAACCGGCGG CTGAGCCTGG CGGTGGGCCG GGGGCGGGTG
GCGGTGGTGC AAAGCGGCGC CGACGACATC CGGATCGTGC CGGAGACGCT GCGGGAGATC
CCGGTGATGC GCGGGTTCGC CGACGACGCG GTGCTGGCCG AGCTGGCCGG GTTGTTCACG
CCGCGGGACT TCGCCCCCGG CGAGGTCATC GCCGAGGCCG GGCATCCGGT CGACGAGGTG
TTCATCCTGG CGCACGGCCG GGTGGAGCGC AGCACCATCG GCGCCTATGG CGAGCCGACG
CTGCTGGGCG TCCTCACCGA CGGCGCGCAC CTGGGAGATG AGGTGCTGCT GCAGGCCGAT
CCGCTGTGGA GCGCCACGGT GAAGGCCACC ACCGCCGGCA CGCTGCTGGC GATGCCGATG
GCTGACTTCG CCCGCATCCG CGAGGGCAAC GCCGACCTGC GGGAGCACAT CGACGCCTTC
GTGGCCCGCA CCGACCGTGC GGTGAACTCC AAAGGCGAAG CGGTCGTGGA CGTCACCTCC
GGACACGAAG GAGAGGTCGA ACTCGCCGGC ACCTACGTGG ACTACGAGCT GTCCCCGCGC
GAGTATCAGC TGTCGTTGAC GCAGACGATC CTGCGGGTCC ACTCCCGCGT CGCCGACCTC
TACAACGACC CGATGGACCA GGTCAAAGAG CAGCTGCGGC TGACGATCGA GGAGATCCGG
GAGCGGCAGG AGTGGGAGCT GCTGAACAAC CGGGAGTTCG GGCTGCTGCA CAACACCGAC
TACGACCAGC GGATCAGCAC CTGGTCCGGG CCGCCGACCC CGGATGACAT GGACGACCTG
TTGGCGATGC GCCGCAGTAC CACCATGTTC CTGGCACACC CCAAGGCGAT CGCGGCGTTC
GGCCGCGAGT GCAGCAAACG CGGCCTGTAC CCGGACCCGG TGCTCATCGA CGGACACGCG
GTCCCGGCGT GGCGCGGCGT CCCGATCTAC CCCTGCGGCA AGATCGGCGT CGCCGACGGC
CACACCTCCT CCATCGTGGC GATGCGCCTG GGCCGGGAAC AGCAGGGCGT GGTCGGGCTG
CGGCAGACCG GCATCCCGGA TGAGTACGAA CCGGGCCTGA ACGTCCGGTT CATGGGGATC
ACCGACAAGG CGATCATCAA ATACCTGGTC ACCGCGTACT ACTCGACCGC GGTCCTGGTG
CCCGACGCCA TCGGGATCCT GGAGAACGTC GACGTCGCGG CACCGCGCGG CTGA
|
|---|
| Protein sequence | MTITPDRTAE QAPEDPAATD SPLSLSTDAA RNLATTTKTQ PQMRGITSRW LLRRLPWEEV
SGGTYRVNRR LSLAVGRGRV AVVQSGADDI RIVPETLREI PVMRGFADDA VLAELAGLFT
PRDFAPGEVI AEAGHPVDEV FILAHGRVER STIGAYGEPT LLGVLTDGAH LGDEVLLQAD
PLWSATVKAT TAGTLLAMPM ADFARIREGN ADLREHIDAF VARTDRAVNS KGEAVVDVTS
GHEGEVELAG TYVDYELSPR EYQLSLTQTI LRVHSRVADL YNDPMDQVKE QLRLTIEEIR
ERQEWELLNN REFGLLHNTD YDQRISTWSG PPTPDDMDDL LAMRRSTTMF LAHPKAIAAF
GRECSKRGLY PDPVLIDGHA VPAWRGVPIY PCGKIGVADG HTSSIVAMRL GREQQGVVGL
RQTGIPDEYE PGLNVRFMGI TDKAIIKYLV TAYYSTAVLV PDAIGILENV DVAAPRG
|
|---|
| |