Gene Caci_4562 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_4562 
Symbol 
ID8335916 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp5190009 
End bp5190470 
Gene Length462 bp 
Protein Length153 aa 
Translation table11 
GC content69% 
IMG OID644957663 
ProductCupin 2 conserved barrel domain protein 
Protein accessionYP_003115265 
Protein GI256393701 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0662] Mannose-6-phosphate isomerase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCATGG CCTACGTCTC ACAGCCCGAT CAGCAGCAGA AGCTCGAATG GCTCGACGGG 
GGGACGCTCG CGATGCTCCT GGACGGGGCG GCCACCGATG GGAACCTGAT GATCGGCCGC
TTCGACGTCG CCGAGGGCGA GGCGCCGCCC TACCACGTGC ACACCCGCGA GGACGAGGTC
TTCCTGCTGA TCAAGGGGAC CGCGCTGGTG TGGTGCGACG ACCAGGAGTA CGAGCTGTCC
GAGGGCGGCG TGGTCTACCT GCCGCGCCGG CATCCGCACG GCTACCGCAT CACCTCCAAG
CGTGCCGACC TGCTGATGAT CAACACGCCG GCCGGCATCG AGGGCATGTT CCGCGCCGTC
GGCCGCGACC TGAGCACGCC GCGCCCCGAG GGCTTCGAGA TCAAGCCGGA CCCGGCGGTC
TCCGAGCAGT ACGGCAGCGC GATCGTCGGA CCGCCGCGCT AA
 
Protein sequence
MSMAYVSQPD QQQKLEWLDG GTLAMLLDGA ATDGNLMIGR FDVAEGEAPP YHVHTREDEV 
FLLIKGTALV WCDDQEYELS EGGVVYLPRR HPHGYRITSK RADLLMINTP AGIEGMFRAV
GRDLSTPRPE GFEIKPDPAV SEQYGSAIVG PPR