| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_4392 |
|---|
| Symbol | |
|---|
| ID | 8335746 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 4984898 |
|---|
| End bp | 4986868 |
|---|
| Gene Length | 1971 bp |
|---|
| Protein Length | 656 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 644957495 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003115097 |
|---|
| Protein GI | 256393533 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR02243] conserved hypothetical protein, phage tail-like region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.642574 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTTTGC CCTCGCCGAA CCTCGACGAC CGCCGGTTCC AGCAGTTCGT GGACGACGCC
AAGCGGTACG TCCAACAGCG CTGCCCGGAG TGGACCGACC ACAACGTCTC CGACCCCGGC
GTGACGCTCA TCGAGGCCGT GGCCTACATG GCCGACCAGC TGGTCTACCG GCTCAACCGG
GTCCCGGACA AGAACTACCT GGCGTTCCTG GACCTGTTGG GGATCAACAG GTTCCCGCCG
GCGCCGGCGC GCGCCGACGT CACCTTCCGG CTCTCCGCGC CGCAGCCGAA CACGGTGCTG
GTCCCGGCCG GCTCGCAGAT CGCGACCCTG CGCACCGAGT CCGAGGAGGC GCTGGTCTTC
AGCTCCGGCG AGCCGCTGCG GATCGTGCCG TGCTCGCTGA CCGCCGTGGT GGTGCAGAAC
AACGGCGCGA GCCCGACCGA CCGGACCGTG GACGTGCTCG ACGGCAAGGA CGTGCCGGCG
TTCTCCCCGG CTCCGGCACC CGGCGACGCG CTGTACTTCG GGCTGTCCTC GCCGGTGCCC
TCCTGCGTGG CGGTGCTGCG GCTGAGCAGC CAGGTCGACG GCGTCGGCGT GGACCCGCGC
CAGCCGCCGC TGGTCTGGGA GGCGTGGTCG GCGGACGGCT GGATGGCCTG CGAGGTGGAC
TCCGACGAGA CCGGCGGTCT GAACCGGCCC GGCGACGTCT CCCTGCACGT CCCCTCGCGG
CACATCGTCT CGCGCCTGGC CGGGATCGAG GCGGCCTGGC TGCGCTGCCG GGTCCTGGAG
CCGCGCGCGG CGCAGCCCTT TTACGCGGTG AGCCCGAGCC TGCGCGGAGC CTCGGCGCGC
ACGATGGGCG GCACGGTCCG CGCCCTGCAC TCCGAAGCCG TCCGCGACGA AGAGCTCGGC
GAGTCCTCCG GCGTCGCCGG GCAGCGTTTC CACCTGTCCC GCACGCCGGT CGCGGTCGAC
GACCCGATGC TCCAGCTCGA CACCTCCGAC GGCGAGGGCT GGCAGCGCTG GGAGCTGGTC
GACACCTTCG CCGGCTCCGG TCCGGACGAC CGGCACTTCC AGCTGGACCC GGTCACCGGC
GAGATCGCCT TCGGTCCGGC GCTGCGTCAG CCGGACGGCA GCGTCCAGCA GTACGGCGCG
GTCCCGCTCA AGGGCGTGCG CATCCGGGCC ACCGCCTACC GGATCGGCGG CGGCCGGGCC
GGCAACGTGG CGCGCGGTGC TCTCAGTGTC CTGCGAACCT CGATCCCTTA CGTCTCGCAG
GTGGAGAACC GCGAAGCCGC ACGCGGCGGC GTCGACGGCG AATCGGTGGC CGAGTCGAAG
GTGCGCGCGC CGATCTCGCT GCGCGCGCAG GATCGCGCGG TGACGGTCCG GGACTATGAG
GAGCTGACCC GCCGCGCCGC TCCCGAAGCC GCGCGCATCC ACTGCCTGTC GGTGGACGAG
AAGACCAAGC TCCACGGCAA GGAAGCCGGG ATCGGCGCGG TCCGGCTGCT GGTGGTCCCG
CAGGCGGTCC CGGACGTCGG CGGCTTCCTG CGCTTCGAGC AGCTGGTGCC CGGGGACGAG
CTGCTCAGCC GCATCGCCGC CTACCTGGAC GACCGGCGCC CGATCGGCAC CCGGCTGGCC
GTCGGACCGC CGTACTACCA GGGCGTCACC GCCGCGGTGA CGCTGCACGC CTTCCGCGGC
GCCGAGACCG ACCAGGTCCG CACCGGCGCC GTCAACGCCC TGTATTCCTA TCTCGACCCG
CTGACCGGCG GACCGACCGG GGAGGGCTGG CCGTTCGGCC GCTCGGTGCA CTCCGGGGAG
CTGTACGCGG TGCTGCAGCG CGTCCCCGGC GTGGAGATGG TCGACGAGGT GCGCCTACAC
CCGGCCGACC CGCTGACCGG CAAGCGCGGC GACTCCGCCG AGCGGATCGA GCTGGACCCC
TCGGCGCTGG TGTTCTCCTA CGACCACCGG GTGAAGGTGG TCGGCGGATG A
|
|---|
| Protein sequence | MALPSPNLDD RRFQQFVDDA KRYVQQRCPE WTDHNVSDPG VTLIEAVAYM ADQLVYRLNR
VPDKNYLAFL DLLGINRFPP APARADVTFR LSAPQPNTVL VPAGSQIATL RTESEEALVF
SSGEPLRIVP CSLTAVVVQN NGASPTDRTV DVLDGKDVPA FSPAPAPGDA LYFGLSSPVP
SCVAVLRLSS QVDGVGVDPR QPPLVWEAWS ADGWMACEVD SDETGGLNRP GDVSLHVPSR
HIVSRLAGIE AAWLRCRVLE PRAAQPFYAV SPSLRGASAR TMGGTVRALH SEAVRDEELG
ESSGVAGQRF HLSRTPVAVD DPMLQLDTSD GEGWQRWELV DTFAGSGPDD RHFQLDPVTG
EIAFGPALRQ PDGSVQQYGA VPLKGVRIRA TAYRIGGGRA GNVARGALSV LRTSIPYVSQ
VENREAARGG VDGESVAESK VRAPISLRAQ DRAVTVRDYE ELTRRAAPEA ARIHCLSVDE
KTKLHGKEAG IGAVRLLVVP QAVPDVGGFL RFEQLVPGDE LLSRIAAYLD DRRPIGTRLA
VGPPYYQGVT AAVTLHAFRG AETDQVRTGA VNALYSYLDP LTGGPTGEGW PFGRSVHSGE
LYAVLQRVPG VEMVDEVRLH PADPLTGKRG DSAERIELDP SALVFSYDHR VKVVGG
|
|---|
| |