| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_4389 |
|---|
| Symbol | |
|---|
| ID | 8335743 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 4981782 |
|---|
| End bp | 4982495 |
|---|
| Gene Length | 714 bp |
|---|
| Protein Length | 237 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644957492 |
|---|
| Product | Peptidoglycan-binding LysM |
|---|
| Protein accession | YP_003115094 |
|---|
| Protein GI | 256393530 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.855659 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.278561 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGTGC AGCCCGGAGT CAGCCTCGTC AAGGCCTCGC TGACGATCAA GGAGCCGCCG
ATCGGTCCCG CGCTGGAGCC CGGCGGGACG ATGCGGGAGA TCAACTTCCA GTTCAACCCT
GAGACGCTGA CGCTGGCCAA GAGCGCCAAC TGGAGCAACA CCCCGCTTCC CCTGTTCAAG
TACGTCAGCA TCCCCAGCTT CGGCGGCGCC GATCCCTACA CCCTCACCTT CCAGCTCTTC
CTCGACTCCT CGATGACGCC GGCCGGCACC AAGGTGCAGG ACGACGTCGA GGCCCTGCTC
AAGTGCTGCG AGGTGACCGA CCAGTCGATC GCCGCCTTCC AACCCTCCAC GCCGTGGGTC
TTCTTCCAGT GGGGCAGCTT CTCCACGGTC AGTTTCAACG CATATGTGCA AAACATCTCT
GCTAACTACA CGTACTTCGA CCCCTCCGGG GTTCCCTTGC GGGCCACCTG TGATCTGACG
ATCACTCAGA TCCCCGGCCT CACCCTGGGT CAGAACCCCA CCTCCGGCGC CCTGTCCGCG
CACCGCTCGC ATCGCGTGCG CGCCGGAGAC ACCCTGCAGT CCATGGCCTG GTCCGAGTAC
GGCGACGCCA CCGCGTGGCG GACCATCGCC GAGGCCAACG AGATCGACGA CCCGATGCGG
CTGACGCCGG GCGCCGAGCT GCTCATCCCC GCCCCCGACC AGGTGCGGAG GTGA
|
|---|
| Protein sequence | MAVQPGVSLV KASLTIKEPP IGPALEPGGT MREINFQFNP ETLTLAKSAN WSNTPLPLFK
YVSIPSFGGA DPYTLTFQLF LDSSMTPAGT KVQDDVEALL KCCEVTDQSI AAFQPSTPWV
FFQWGSFSTV SFNAYVQNIS ANYTYFDPSG VPLRATCDLT ITQIPGLTLG QNPTSGALSA
HRSHRVRAGD TLQSMAWSEY GDATAWRTIA EANEIDDPMR LTPGAELLIP APDQVRR
|
|---|
| |