Gene Caci_4246 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_4246 
Symbol 
ID8335600 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp4818688 
End bp4819086 
Gene Length399 bp 
Protein Length132 aa 
Translation table11 
GC content71% 
IMG OID644957349 
ProductTransthyretin 
Protein accessionYP_003114951 
Protein GI256393387 
COG category[R] General function prediction only 
COG ID[COG2351] Transthyretin-like protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.0608669 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAAGTTGT CCATCCTCGT CATCGACGTC GCCTTCGGCG TGCCCGGAGC CGAGCTCTCA 
GCCCGGCTCC GGCGCCGCAG CGAGGCCGGG TGGCAAGAGC TGTCCACAGG CCGCACCGGC
GGCGACGGCC GCCTGGAGCT GCATCCCGCC CCCGCCGGCC GCGGCACCTA CCAGCTGGTG
TTCGACCTCG ACGGCTACTA CCACGGCCTG GGCAGCGTCC CGCTGCACCC GCGCGCCATC
GTCGAGTTCA GAGTCACCGA CGCCCACAAG GATCTGCAGC TGGCGCTGTT CATCTCGCCG
CATTCCTTCT GCACGTTCCA GGATTCCGGC GCGATGCCGC CGCGCATTCC CGACTTCGCG
ACCGACGCCG GGCCCGCCTC CGCTGAGCGG GCGGGCTGA
 
Protein sequence
MKLSILVIDV AFGVPGAELS ARLRRRSEAG WQELSTGRTG GDGRLELHPA PAGRGTYQLV 
FDLDGYYHGL GSVPLHPRAI VEFRVTDAHK DLQLALFISP HSFCTFQDSG AMPPRIPDFA
TDAGPASAER AG