| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_4218 |
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| Symbol | |
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| ID | 8335572 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | + |
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| Start bp | 4783010 |
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| End bp | 4784251 |
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| Gene Length | 1242 bp |
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| Protein Length | 413 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644957321 |
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| Product | spermidine/putrescine transport system substrate-binding protein |
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| Protein accession | YP_003114923 |
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| Protein GI | 256393359 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4134] ABC-type uncharacterized transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.244138 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGCTA TGTCCGTGCG CAAAGACGCC ATGTCTCGTC GTACTCTGCT GGGCTCGTTG
GCGGTGGGCG CTGCCGCCGC GCCCTTGGTC TCCGCGTGCG GGGCGCCGGG GTCTTCGGGT
GCTGCCAAGG CGGCGCCGCC TAGTACGTTG GCGAGCACGC CGTCCAAGCC GGTGTCGTTG
AACATTCTGG ATGTGGCTGG GAATCTGCAG CTCACGCAGC CGATTCTGGA TGCCTTCAAG
GCTCAGCATC CGCAGATCGT CTCGGGCATC ACCACCAGTA CCGGTACCGC GCCGGAGTTG
GCGCCGAAGG TGCAGGCGCA GCAGCAGGGC GGGAATGTGC AGATCGATCT GGTGCTGACC
GGGACCGACG GGTTGGCCGC CGGGATCGAG AAGCAGCTCT GGTACAACCT CAAGCCCTAC
TACGACACCT TCTTCCCCGG GCTGATGGCC AACTACAACC CGGCTGCCGC CTCCATGGCC
TCGCTGGCTC AGGACCAGGG CATCGAGCTG GTCGTCACGC CCTCCGGGCC GCTGCTGGAG
TATGACCCGG CCAAGGTCGC CACGCCGCCG ACGACGCCGG ACGCGCTGCT GGCGTGGGCG
CAGGCGCATC CCGGCAAGTT CCAGTACGCG CAGCCGCGCA ACTCCGGTCC GGGGCGGACG
TTCCTGATGG GGCTGCCGTA TCTGCTCGGC GACTCCGACC CGAGCGATCC GACCAATGGC
TGGGCCAAGA CCTGGGACTA CCTGGCGCAG CTGGGCAAGT ACGCGGCGAG CTATCCGACG
AAGACCTCTG CGACGATGAC CGCGATCGCG CAGGGTACCG CCTGGATGAT CGCCTCCACC
GCCGGCTGGT ACATCAACCC GCGGGCCACC GGGACCGTCC CGGCGGGGAT CAAGGTCGTC
AAGTTCGACA ACCTGACCTG GGTCAGCGAC GCGCAGTTCG GCGTCATCCC CAAGGGCATC
CCGGCCGACC ACCTGACCGC GGTGCTGCGG CTGCTGGCCT TCGCGCTGAC GCCGGAGCAG
CAGGCGGTGA CGTACGACCA GGGCTACTTC TACCCCGGCC CGGCGGTGAA GGGCGTGACC
CTCGCGCAGG CGCCGGCCGC CTCGCAGCAG GTCGTGCAGA AGTTCGGCGA CCCCGACTTC
GACACCTGGA CCTCCTCCGG GCCGATCCGC AACTCGCTGC CCGCCCAGGC GCAGGTCACC
GCGTTCGACT TGTGGGACAA GAAGATCGGC GCGGCGAAGT GA
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| Protein sequence | MSAMSVRKDA MSRRTLLGSL AVGAAAAPLV SACGAPGSSG AAKAAPPSTL ASTPSKPVSL
NILDVAGNLQ LTQPILDAFK AQHPQIVSGI TTSTGTAPEL APKVQAQQQG GNVQIDLVLT
GTDGLAAGIE KQLWYNLKPY YDTFFPGLMA NYNPAAASMA SLAQDQGIEL VVTPSGPLLE
YDPAKVATPP TTPDALLAWA QAHPGKFQYA QPRNSGPGRT FLMGLPYLLG DSDPSDPTNG
WAKTWDYLAQ LGKYAASYPT KTSATMTAIA QGTAWMIAST AGWYINPRAT GTVPAGIKVV
KFDNLTWVSD AQFGVIPKGI PADHLTAVLR LLAFALTPEQ QAVTYDQGYF YPGPAVKGVT
LAQAPAASQQ VVQKFGDPDF DTWTSSGPIR NSLPAQAQVT AFDLWDKKIG AAK
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