Gene Caci_4202 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_4202 
Symbol 
ID8335556 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp4759548 
End bp4760324 
Gene Length777 bp 
Protein Length258 aa 
Translation table11 
GC content70% 
IMG OID644957305 
ProductABC-2 type transporter 
Protein accessionYP_003114907 
Protein GI256393343 
COG category[V] Defense mechanisms 
COG ID[COG0842] ABC-type multidrug transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGCCG GGAACCCGAA CGCCTCCGGC ACCCCGCTGG GTGCCCTGAG CGTGGCCATC 
GCCCGCTCCT ACTACCGCGA CAAGGTGACG CTGTTCTTCA CCTTCGCCTT CCCGCTGATC
TTCCTGGTGG TCTTCGGCGT GCTGTTCCGC GACCAGACCG TCGGCGGCGG CGGCTTCATC
GCCTCCACCG CGGCCGGCGT GCTGTCCTGG GCGGTGGCGA CCTCGGCGCT GTTCGGCGTC
GCCTACACCC TGATGCACTG GCGCAGCACC GAGGTGCTCC GGGTGATCCG CATGACCCCG
ACCCGGCTGC CCACGGTCAT GGGATCACGG TTCCTGGTCG CCGTGGCGGT GGCGCTGGTG
CAGGCGGTGT TCTTCGTCGG CGTGGCGATG CTGCCGGTGT TCGGCTTGCG ACTGTCCGGC
CGGGCGGTGC TGGCGATCCC GGCGATCCTC GCCGGGGTGA CCGCGTTCTT CGCGCTGGGA
CTGCTGGTCA GCGTGGTCGC CTCGTCCTCG GAGGCGATCG CGGCGATCGC CAACTGCGTG
ATGACGCCGA TGGCCTTCCT GTCCGGCACG TTCTACCCGA TCAGCCTGAG CCCGCGCTGG
ATCCAGGACG TCTCCTGGGT GCTGCCGCTG CGCTACCTGG TCAACGGCAC GGTCGGACCG
GTCGGCGGGA CCGGCGGGAT CTCCACGGTG CTGGTGTCCT GCGCGGCGCT GCTGGGCTTC
ACCGCCTTGT TCGCCGGGCT GGCCGCGCGG TACTTCCGCT GGAGCCGTGA GGCATGA
 
Protein sequence
MSAGNPNASG TPLGALSVAI ARSYYRDKVT LFFTFAFPLI FLVVFGVLFR DQTVGGGGFI 
ASTAAGVLSW AVATSALFGV AYTLMHWRST EVLRVIRMTP TRLPTVMGSR FLVAVAVALV
QAVFFVGVAM LPVFGLRLSG RAVLAIPAIL AGVTAFFALG LLVSVVASSS EAIAAIANCV
MTPMAFLSGT FYPISLSPRW IQDVSWVLPL RYLVNGTVGP VGGTGGISTV LVSCAALLGF
TALFAGLAAR YFRWSREA