| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_4079 |
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| Symbol | |
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| ID | 8335432 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | - |
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| Start bp | 4605221 |
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| End bp | 4607851 |
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| Gene Length | 2631 bp |
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| Protein Length | 876 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644957182 |
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| Product | hypothetical protein |
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| Protein accession | YP_003114785 |
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| Protein GI | 256393221 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00459285 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.104503 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGATCCTGC ACCACACCGC CGCACCTACG CCGAGCCCGT CCGTCCCAAG CCCGCACGCC
GCCTCCGGCC TGATCGCGCG GCTGATCACC CACCCTGGGG CCGAGTTCGC ACACCTGGGC
CGTACCGCCG GGCGCTTCGC GCTTTCCTAT GGCCCGCTTT GGGGGCCGCT GACCCTGTCC
GTCATCGCCA CAGCCCTGTT CGCCCGTGCC CGGCACCGCC GCGCCGTCCA CGAGAGGTTC
ACCGAGAACG CCCGGCTGAT CACGGTGATG GCCCCGCCGA AGGTCGACGC CGACGGCGCG
CACGCCTTGT GGTCGCACCT GCTCGGGCTG CTGCGCCCAG CGCGCCGGCG GCTGCTATCC
GGGCAGCCGC ACCTGGCCTT CGAATACGGC TGGACCCGCG CCGGTCTGCG GATCTCGATC
TGGGTCCCGG GCGTGGTGCC GCCCGGGATG GTCGACCGCG CCATCGCCTC GGCCTGGCCG
GGCGCGGCCA CCGACACCCA GCCCGCAAGT AGCGCGGCGC TGCTTCCCGC CTCGGCTGCG
GCGACCGGCG GCCGTCTTCG CCCGGCGCGC ACCGAGCTGC TGCCGATCGA GACGAACCAC
GACTCCGACC CGCTGCGCCC GCTGCTGGGC GCGTGCGCGG GGCTGTCCGG CGATGAGCAC
ACCGCCGTTC AGATCCTGGC CCGCCCGGTC ACCGGGCGCC GGACCCGCCG CGCGCGACGT
CAGCTGACCG CGATGCGCAC TGGACGCTCG GCCAGCCCGC TGTCCAGGAT CCTGGACTCC
GTCACCCCTG GCGCGAACAG CACCGCCTCC CGCCTCCCGG CGCGGATCCC GGGCGTCCCG
GCGGACCCGA CCAAGACCGC CGAGCTGCGC GCCGCCTCAG CCAAGCTCGC TGGCGGGCTG
TGGGACGTGC GCGTGCTGTA CGCCGCCTCG TCCACCGCGA GCGGCGAGAC CGCAAAGAGT
CCGCGGCTGC GCGGGCGGGC CCACGCGATC GCGAGCGCGT TCTCCATGTT CGCCGGGCAG
AACTGGTTCG CCCGCAAGAA GCTGTCAGGT TCCGTCAAGT GCCTCAACAG CAGACGGTTC
GCAGGGCGAG GCAGCCTGCT GGGCGTCGCC GAGCTGGCGG CGATCGCGCA CCTTCCGACC
GACCCGGCTG CCCCCGGCGT CGAGCGCGCC GGAGCCCGCA CCGCCGTCCC GCCGCCGGGC
ATCCTCACGC CCACCGGGCC GGACGCAGAC GCCTCGGTGC CGCCGGTCAA ACCGCTGGGC
GTCTCCGAAT CGGCCAACCC CAGGCCGGTC GGGCTCGCGG TGGCCGACTC CCGCCAGCAC
GTCCACATCC TCGGAGCCAC CGGCTCCGGC AAGTCGACCC TGATGACCCA CATGATCCTC
GACGACGTGG CCGCCGGGCG CGGTGTCGTG GTCATTGACC CCAAGGGCGA CCTCGTCAAC
GACATTCTGG CCCGCCTGCC CGAATCGGCG GTCGGCCGCA CCGTCGTCTT CGATCCCGAC
GACGCCTCCG CGCCACCGAG TCTCAACGTT CTGCAGCTGG AGCGGCCCGA CGAGGTCGAC
ATGATCGTCG ACAACCTGTG CGGGCTGTTC GGCCGGATCT TCTCCAGCTT CTGGGGCCCG
CGCACCGACG ACAACCTGCG CAGCGCATGC CTGACGCTTC TACACGCGCC GGAGGCGGCG
ACCGGCGGCG TCTCCCTCGC GGACATTCCC AGGCTGCTCG GCGAGGACGC CTACCGCCGG
CGTATGACCG CCGGACTGAA AGACCCGGTG CTTCGCGGCT TCTGGTCCCA GTACGAGCAG
CTGTCCGACG CCCAGCGGGC GAACCACGTC GGGCCGCTGA TGAACAAGCT GCGTGCGTTC
CTGCTCCGCT CGTTCGTCCG CGACTCGATC GCCGACGGCC CCAGCTCTTT CGACATGGAG
AAGGTCCTGG ACGGCGGGGT CCTGCTGGTG CGCCTGCCCA AGGGCGTCAT CGGTGAGGAG
ACCGCCAAGC TGCTTGGCAG CTTCGTCGTG GCGAAGGTGT GGCAGGCCGC GTCCCGCCGG
GCGAAGCTGC CGCAGCACCT GCGCCGCGAT TGCAGCCTCT ACCTGGACGA GTTCCAGAAT
TTCCTCAACC TCCCGTATCC GATGGAGGAC ATGCTCGCCG AGGCCCGCGG CTACCGGCTC
TCGCTCACCC TGGCCCACCA GAACCTCGCC CAGCTCCCGA ACGACCTGCG CGAAGGCATC
TCCGCCAACG CTAGAACGAA GCTGTTCTTC AACTCGAGCC CCGAAGACTC CCGGCTGCTG
GAGCGGCACA CCACCCCGAT CCTGCTTCAG CACGACCTGT CCCATCTCGG CGCGTTCCAG
GCCGCGGCAC GGCTGGTCAC CGGCTCCCAG CAGCGGCCCG CCTTCACGCT GCGGACCCAG
CCGCTGCCGG CCCCGATCGC CGGACGGGAC AACCTGATCC GCGCCTCGGC CCGCAACGCC
TTCGGCCACG CTCCCGGCAG CACCCGCCGC CCCGGTATCG CCACCGGTCC CAAGAAGCGC
GGCGGCAGGC CCGCCGGAGC CGCGCGCTCC GGCCCGAAAC CGGACCGTCA GGGCCCAGAC
ACCAGCGCCG CAGCCGAAGA CCCCGACGCG GGCCGTCCGC GCGCCGCATA A
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| Protein sequence | MILHHTAAPT PSPSVPSPHA ASGLIARLIT HPGAEFAHLG RTAGRFALSY GPLWGPLTLS
VIATALFARA RHRRAVHERF TENARLITVM APPKVDADGA HALWSHLLGL LRPARRRLLS
GQPHLAFEYG WTRAGLRISI WVPGVVPPGM VDRAIASAWP GAATDTQPAS SAALLPASAA
ATGGRLRPAR TELLPIETNH DSDPLRPLLG ACAGLSGDEH TAVQILARPV TGRRTRRARR
QLTAMRTGRS ASPLSRILDS VTPGANSTAS RLPARIPGVP ADPTKTAELR AASAKLAGGL
WDVRVLYAAS STASGETAKS PRLRGRAHAI ASAFSMFAGQ NWFARKKLSG SVKCLNSRRF
AGRGSLLGVA ELAAIAHLPT DPAAPGVERA GARTAVPPPG ILTPTGPDAD ASVPPVKPLG
VSESANPRPV GLAVADSRQH VHILGATGSG KSTLMTHMIL DDVAAGRGVV VIDPKGDLVN
DILARLPESA VGRTVVFDPD DASAPPSLNV LQLERPDEVD MIVDNLCGLF GRIFSSFWGP
RTDDNLRSAC LTLLHAPEAA TGGVSLADIP RLLGEDAYRR RMTAGLKDPV LRGFWSQYEQ
LSDAQRANHV GPLMNKLRAF LLRSFVRDSI ADGPSSFDME KVLDGGVLLV RLPKGVIGEE
TAKLLGSFVV AKVWQAASRR AKLPQHLRRD CSLYLDEFQN FLNLPYPMED MLAEARGYRL
SLTLAHQNLA QLPNDLREGI SANARTKLFF NSSPEDSRLL ERHTTPILLQ HDLSHLGAFQ
AAARLVTGSQ QRPAFTLRTQ PLPAPIAGRD NLIRASARNA FGHAPGSTRR PGIATGPKKR
GGRPAGAARS GPKPDRQGPD TSAAAEDPDA GRPRAA
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