| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_4033 |
|---|
| Symbol | |
|---|
| ID | 8335386 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 4564339 |
|---|
| End bp | 4565232 |
|---|
| Gene Length | 894 bp |
|---|
| Protein Length | 297 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644957139 |
|---|
| Product | type II secretion system protein |
|---|
| Protein accession | YP_003114742 |
|---|
| Protein GI | 256393178 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4965] Flp pilus assembly protein TadB |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.268876 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.00614024 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGATGACTG CTCTGATCTG CGGCGGCGGG TTCGGTCTCG CCGTGGCGGT GCTGGTCTAC
GGGCTGTATC CGCCCAAGCC GACCCTGGCG CAGGCCATGT CGGCATTGTC CGCGAGCACC
GCCCCAGCGC CGATCCTTGC CTCGAAGGCC GACGGCTGGG TGGCCCGCGC CGGAGCCCCG
CTGGCGGGGT TCCTCGGCGG GCTCGGCCTG CCCGGCGCGC GGGCCCGCAA GGACCTGGCG
GTCCTGGAGC GCTCGACGTC AGCGCACCTG GCACAGAAGG GCATGCTCGC TGTACTCGGT
CTCGGCGCTC CGCTGGCCAT GGCCGCACTG ATGTCAGCGG CCGGGTCGCC GCTGGGCTGG
CTGCTGCCGC TGTGGCTGTC GGTCGCATTC GCCGCAGCCG GGTTCCTGGC TCCGGACTAC
GTCATCCGTG CCGAGGCCGC CGAGCGCCGC AAGGACATGG TCCGGGCCCT GAGCGCGTTC
CTGGACCTGG TCACGCTGTC GCTGGCCGCT GGCGGCGGGG TCGAGGCGGC ATTGAAGGAA
GCCTCGCTCG TGGGCGACGG CTGGGCCTTC ACCGCGCTGC GCAAGGCCCT GGCCACCGCC
GAGATCTCCC GAGTGGCCCC CTGGCAGACC CTCGGTCAGC TCGGCGCGGA GCTGGACGTT
CCGGCGCTGG GCGAGCTGGC CGCTTCGTTG GCGCTTGCCG GCTCTGAGGG CGCGAAGGTC
CGCGCGTCGC TGTCGGCCAA GGCCGCCACG CTGCGCGCGA ATGGCCTGGC TGAGGCCCAG
GGCGAGGCGA ACGCCGCCAG CGAGCGGATG AGCTTGCCCG TGGTCGTCAT GGGCTTGGGC
TTCATGCTCC TGATCGGCTA CCCGGCCATG GCCCACGTCA TGAACGGCCT GTGA
|
|---|
| Protein sequence | MMTALICGGG FGLAVAVLVY GLYPPKPTLA QAMSALSAST APAPILASKA DGWVARAGAP
LAGFLGGLGL PGARARKDLA VLERSTSAHL AQKGMLAVLG LGAPLAMAAL MSAAGSPLGW
LLPLWLSVAF AAAGFLAPDY VIRAEAAERR KDMVRALSAF LDLVTLSLAA GGGVEAALKE
ASLVGDGWAF TALRKALATA EISRVAPWQT LGQLGAELDV PALGELAASL ALAGSEGAKV
RASLSAKAAT LRANGLAEAQ GEANAASERM SLPVVVMGLG FMLLIGYPAM AHVMNGL
|
|---|
| |