Gene Caci_4029 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_4029 
Symbol 
ID8335382 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp4560589 
End bp4561281 
Gene Length693 bp 
Protein Length230 aa 
Translation table11 
GC content72% 
IMG OID644957135 
ProductSAF domain protein 
Protein accessionYP_003114738 
Protein GI256393174 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.177398 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.00623297 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCTACCT CCATGCCGAA AATGGCCCCG GTGAAGATCT CCGGACGTCT GGGCGGCTCG 
GCGAAGAAGG CTGAGCCGCG TCTGTCGCCG GCGGCGAAGC GCCGCAGCGT GCCCTACGCA
GTCCTCGGCG GCGCGCTCGC GGTGGTGTTC GCGGTCGGGT TCGCGGCGAC CTCGCTGAAC
TTCGGCGGGA AACAGTCGTA TCTGGCGGTG GTGAAGCCCG TGCGCGCCGG GCAGGTCATC
CAGGCGTCCG ACCTGGCCAC GGTGCAGGTG GCCACGAATG CAGGTCTGGG TCTGATCCCG
GCCTCAGCGC AGAACTCGGT GGTCGGGCAG GCTGCGGCGC TGCCGCTGGC CCCCGGTGCG
CTGGTGACGC GACGCGAGGT TGGCCCGGCC AGCTTCCCGC CTGCCGGGCA GCAGGTGATC
GCGGTGGCGG TGAAGACCGG GCAGTACCCG ATGGAGCTGG CTCCCGGCGC GCACGTGATC
GTCGGCACCG CTCCGGCGTC CGGCAGCTCG GGCACCGCGA CGGTGACGCC GCTGTCGGCC
GCGCCGAGCG CGGTGGTGCT GTCGATCACA CCGGGCACGG ACTCCGGTAC GGGCTCGGTG
TCCTTGCTGG CCGATGCTGG TTCTGCTTCG GCGATCGCGG CGATTCCGGC CGCGCAGGTG
CAGCTGGTGC TGTCCGCTCC GGCGGGGAGC TGA
 
Protein sequence
MATSMPKMAP VKISGRLGGS AKKAEPRLSP AAKRRSVPYA VLGGALAVVF AVGFAATSLN 
FGGKQSYLAV VKPVRAGQVI QASDLATVQV ATNAGLGLIP ASAQNSVVGQ AAALPLAPGA
LVTRREVGPA SFPPAGQQVI AVAVKTGQYP MELAPGAHVI VGTAPASGSS GTATVTPLSA
APSAVVLSIT PGTDSGTGSV SLLADAGSAS AIAAIPAAQV QLVLSAPAGS