| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_3988 |
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| Symbol | |
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| ID | 8335341 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | + |
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| Start bp | 4522213 |
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| End bp | 4523718 |
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| Gene Length | 1506 bp |
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| Protein Length | 501 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644957102 |
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| Product | high-affinity nickel-transporter |
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| Protein accession | YP_003114705 |
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| Protein GI | 256393141 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2215] ABC-type uncharacterized transport system, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000233692 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.178038 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCCGCC GACCATACCG GGCCGCCGCC TGGATCAAGG CGTCTTGCGC CCTGACCTTC
GCCCTGGCCG CGCCGATCCT CGCCGCCGCC CCGGCTTCCG CCCACCCGCT GGGCAACTTC
ACCGTCAACC ACTACAACGG GATCACGGTG CGTCCCGACC GCATCGACGA CCTCTCCGTC
GTGGACAGCG CCGAGATCCC GACGCTTCAG GCCCAGGCAG GCAGGGATGC CTCACCGGCG
GGCGTTGCCC GTTCCTGCAC CGAGGTCGCC TCACACGTAG CGGTCACCGT TGACGGGCAT
CGCGTGAAGT GGGTGGTGAC CAGCAGCGCC CTGATCTTTC CGCCGGGTGC TGCGGGACTG
CCGACCAGCA GACTCACCTG TGCGCTGACC ACTGCGTTCA CGGCCGGAAA GAGCGTCGCA
GTGGTCGATG ACCAGGACCC CGATCGCATC GGCTGGCAGG AGATCACGGC GATCGGAGTC
GGTGTCCACC TCACTGACTC CACGGTCCCC ACCCAGACCA TCAGCGACGA ACTGCGCCAC
TATCCCAACG ATCTGCTCGC TTCGCCGCTC GGCGTGCGGG ATGCCTCCTT CACCATCGGC
TCCGGTGGAA ACGCCGCGCT CAGCGCGCCC GCCGGATTCG TGGTCAGCGG CGCGGGCCCG
GCGAGTCGTG CACTGGAGAA GCTCAACACC GAAGTCGACT CGCTCATCGG AGTCCGGCAC
CTCACTGTGG GCGTTGCGGC GTTGGCGATC CTGCTGTCGG TCGTGCTGGG CGCCTCCCAC
GCGGCCCTGC CCGGGCACGG CAAGACCGTC ATGGCCGCGT ATATGGCCGG ACGCGGGGGA
GGGATTCGCG ACGCGGTGAT CGTCGGCGCC ACGGTCACAG CGACCCATAC GTCCGGAGTG
ATCGTCCTGG GCCTGCTGCT GAGCGCTTCG GCGGGGCTGG CGGGGGAGAG CTTGCTCGCC
GTGCTCGGCG TCGTCAGTGG GCTGCTGATC GTCTCGATCG GCGCCGGGTT GCTGCGCACG
GCGTGGCGGG GTCGAACCGC ACACCATCAT GGCCATTCCC ACGGCCACAG CCATTCCCAT
CACCACGACC ACGGTGGCGC GCATGATCAC CACCCACACC ATCACCATGA ACACGACGAC
GACCGATCCA GCCAACCCGA TCGTGCCCCA CGGCGTGCCG GCCGCCGCGC TCTGATCGGC
ATGGGCGTCG CCGGCGGCCT GGTTCCCAGC CCGTCCGCGC TGGTCGTCCT GCTCGGCGCG
GTTGCCCTCG GCCGTACCGT GCTCGGGATC ATCCTGGTCC TGGCCTACGG CCTCGGCATG
GCGGCGACGC TCACCGCCGC CGGCCTGGCA CTGGTCATGC TGGGGCACCG GATGCGGCGG
GAGCGACATG CGCGCTTCGC TACGGCGACC GCCTGGCTCA GCCGGTCCGC ACCGGTGGCG
ACCGCAGGCT TGGTGCTGGT GGTGGGTTTG GGATTGACCG CGCGATCGCT TGCCGGCGCG
GCGTGA
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| Protein sequence | MRRRPYRAAA WIKASCALTF ALAAPILAAA PASAHPLGNF TVNHYNGITV RPDRIDDLSV
VDSAEIPTLQ AQAGRDASPA GVARSCTEVA SHVAVTVDGH RVKWVVTSSA LIFPPGAAGL
PTSRLTCALT TAFTAGKSVA VVDDQDPDRI GWQEITAIGV GVHLTDSTVP TQTISDELRH
YPNDLLASPL GVRDASFTIG SGGNAALSAP AGFVVSGAGP ASRALEKLNT EVDSLIGVRH
LTVGVAALAI LLSVVLGASH AALPGHGKTV MAAYMAGRGG GIRDAVIVGA TVTATHTSGV
IVLGLLLSAS AGLAGESLLA VLGVVSGLLI VSIGAGLLRT AWRGRTAHHH GHSHGHSHSH
HHDHGGAHDH HPHHHHEHDD DRSSQPDRAP RRAGRRALIG MGVAGGLVPS PSALVVLLGA
VALGRTVLGI ILVLAYGLGM AATLTAAGLA LVMLGHRMRR ERHARFATAT AWLSRSAPVA
TAGLVLVVGL GLTARSLAGA A
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