Gene Caci_3980 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_3980 
Symbol 
ID8335333 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp4514650 
End bp4515390 
Gene Length741 bp 
Protein Length246 aa 
Translation table11 
GC content68% 
IMG OID644957094 
Producthypothetical protein 
Protein accessionYP_003114697 
Protein GI256393133 
COG category[S] Function unknown 
COG ID[COG5343] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.24724 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.367091 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACCCGG AAGTCCACTC ACTGACGGGT GCCTACGTCT GCCACGCGCT GGAACCCGCA 
GAGCGCGCTG CTTTCGAACG CCATCTGGCC CAGTGCGCCA CCTGCGCGCA GGAAGTGGCT
GAGCTGCAGG AGACAGCGGC GTTGCTGGCC TCGGCCACGG CCCAGACCCC ACCGGCCCGG
CTGAAGACCG CGGTCGACGC ACGAATCGCC GTTACCCGGC AGATCCCCCC GATCATCGTC
CACGCCCCGG CACGCCCAGC CGTCACCCGA CCCAAGCGTC GCTGGTTCAC CGCTCTGGGC
TGGGGCCTGG CCGTGAGTCT GGCCGCGGTC ACAGCAGTAC TGGGCGTCCG GATGGACGAC
CAGCAGCACC GGATCGACCA GGCCCACCAG CAGAACATCA CGATCACGAC ACTGCTGTCC
GCGCCTGACG TCCATACCGG CAGGGTGATC GTGAGCACCG GCGGAACCGG CACGGTACTC
CTCTCCCGAT CCAACGACGA AGCCTCCATC ACCGTCAGCG GACTGGCGAA GCTATCACCG
GGCCACACCT ACCAGCTGTG GATGATGGGA CCGTCGGGAA CCCGCTCCGG CGGACTGCTG
CCGCCGGGGT CTCGGTCTTC TGACTCGGTC CTGGCACGCG GCCTCGGCGA CGCGCAGACC
ATCGGGCTCA CCGTCGAACC CACCGGTGGT TCGGCTCAGC CGACGACCAC GCCGATCATG
CTGCTGCCGA TGCCCGCTTA A
 
Protein sequence
MDPEVHSLTG AYVCHALEPA ERAAFERHLA QCATCAQEVA ELQETAALLA SATAQTPPAR 
LKTAVDARIA VTRQIPPIIV HAPARPAVTR PKRRWFTALG WGLAVSLAAV TAVLGVRMDD
QQHRIDQAHQ QNITITTLLS APDVHTGRVI VSTGGTGTVL LSRSNDEASI TVSGLAKLSP
GHTYQLWMMG PSGTRSGGLL PPGSRSSDSV LARGLGDAQT IGLTVEPTGG SAQPTTTPIM
LLPMPA