| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_3952 |
|---|
| Symbol | |
|---|
| ID | 8335305 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 4489799 |
|---|
| End bp | 4490605 |
|---|
| Gene Length | 807 bp |
|---|
| Protein Length | 268 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 644957071 |
|---|
| Product | ABC-2 type transporter |
|---|
| Protein accession | YP_003114674 |
|---|
| Protein GI | 256393110 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0842] ABC-type multidrug transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0106214 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.0583359 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCCACTG AAGCCCTACC CTGCTCTGCC CCGCCCATAT CGATCGCCCA CGCCGTACGC
CAGTCCTCGG CCATCGCCCG ACACACCACC AGACTGCTGG CCCGCGAGCC TGGAACAATG
CTCTCCTATA CCATGATGGC AATGGTGCTC CTGACCATGC TGCGACCGCT CTACCAGCGG
ATCGACACCT TCACCGGCCC GGCGATCGAT CAGGAGGCAC CGGGCACGGT AGTGATGTTC
ACCCTGCTCG CCCTCGACAT CGCCGGCCAA AACCTGCTGT CCGAACGGTC CTGGCACACC
TGGGACCGGC TGCGCGCCGG ATCGACCGGC GCGCTCGCCA TCCTGAGCGG CAAGGCGGCT
CCGCTCACGG CACTATTCAC CGTCCAACAG GCGGCGCTGT TCAGTTTCGC CGCCGCGGTA
TACGGGTTCG ATGTCGCGGC CGGGACCTGG CGCCTTCTAC TCCTGACAGT GGTCTGGGGC
CTATGCGTGA CGGGCCTGGG ACTGGCCATC GGAGCCTGGG TTCGAACCGC AAGCCAGCTT
TCGGCGATCG CCGACATCGG CGCACTCACC GTGACTTGCC TGAGCGGAAG CCTCGTCCCT
CTAGCAATCC TGCCGCACTG GGTCGCCCAC ATCGCACCTT GGACCCCAGG CTATTGGGAA
CTACGCGGAT TCCAATCGGC CGTTGAAGGA GACCAAGCAG TATTCACGAA GTCGCTCAGC
GTCCTCATCG GCATCAGCCT ACTGTCGATG GCACTCGCAG TGACGGGTGC AAAGCGTGGC
CCTCGTTTCA GCGGCCGACT CGTCTAA
|
|---|
| Protein sequence | MSTEALPCSA PPISIAHAVR QSSAIARHTT RLLAREPGTM LSYTMMAMVL LTMLRPLYQR
IDTFTGPAID QEAPGTVVMF TLLALDIAGQ NLLSERSWHT WDRLRAGSTG ALAILSGKAA
PLTALFTVQQ AALFSFAAAV YGFDVAAGTW RLLLLTVVWG LCVTGLGLAI GAWVRTASQL
SAIADIGALT VTCLSGSLVP LAILPHWVAH IAPWTPGYWE LRGFQSAVEG DQAVFTKSLS
VLIGISLLSM ALAVTGAKRG PRFSGRLV
|
|---|
| |