| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_3868 |
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| Symbol | |
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| ID | 8335221 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | + |
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| Start bp | 4377171 |
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| End bp | 4382381 |
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| Gene Length | 5211 bp |
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| Protein Length | 1736 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644956999 |
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| Product | Tetratricopeptide TPR_4 |
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| Protein accession | YP_003114602 |
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| Protein GI | 256393038 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0314468 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATATGG GCGCGGGTCT GGGTGACAGC CATTCGGCGG TGCTGCAGAT CGACGGCGGG
CTGGTGCGTT TCAAGGCCGG CGCGGGGTCC GTCGCGCAAG AGCACAGTGG CCTGACGTAC
CGCGCGCGTG AAGCGCTTCG GGAGCTGCGG GAGCTCCGCC AAGGCACCGA TGCGGTGTGG
TGGGAGCTCG GGCTCGGGCT CGGGGAATCC TTTCTGGACG GGCCGGTCGG GGTTGCGCTG
GCGGCCGAGC TCGGGCGCGC TGCGCAGACC GAAGTACCGT TGCGGCTCGC GCTTGACATC
GCCGAGCCAG CATTGGTGAA CGTGCCGTGG GAAGCAATGG TGCTCCCGGA GAGGTGTGAT
CGGTCGCGGC GACAGATCCC GCTGGCGCAT GACAGTGCGG TGCAGGTTTT CCGGCTCGTG
GAACAGGAGT CTGCGACGGG GACGGCGGTC AGAGCGACAC CCGGAGTGGT AGGCAGGACC
GCAGGCGGCG TTGCCGGCGG GCCGGCAAGG CTGCCGCGGG ATGCCGGATC AAACGGAGCG
CCGCTGGAGG TGTTGGTGGC AATCGCGTTC CCGGAGCGCA GCGGGCTGGA CCGGCTGGAC
TACGAACGGG AGCTTGTGCT GGTCCAGCGG GCGATGCGGC CGGCGATTGA GACTGGCATG
GTGTCGCTGC GGCTACTCAC ATGGGGGACT GCGGACTCGA TCGGCGCCGC GCTGCGTGAG
CGGCCTGCAG ACATCCTGCA CATCTCGTGC CACGCCGCGC CGGGCGTCCT CGCTCTGGAG
ACGGTCGACG GTGAAGAGGA CTTCGTGGAC GCCGGGACGC TGGTCTCGCG AGTGTTCCCG
CAGGACCGAC CAGTCCCGAT GGTTGTGCTG GCGGGCTGTT CCAGCGCGCT GGGCACGGTG
GACGACGTAC AGGGGCCACT ACCTGGCCTG GCTCACGCGC TCGTGGCTCG AGGAGTCGAC
GCGGTGGTGG CGATGACCGC GGACATCTCG GACGACTGTG CCGTCGAGTT CACTGCGGGA
CTATATGCGA CGCTGGCGCA GGATCCAACG TTGGCGCCGC TAGACGTCGT GACCCAGACC
CGGGCTGCAT TGGCACCTTT GCCACCGCGC GAGCCGGGGA TGACGGAGCC GCAACAAGAA
CCGGCCCGAG AACGGGGGCG AGAGCAGGCT GACAGAAACG GCCGAGAGGC GAGGACGACG
CTGATTCCAG CCTTGTTCCT CAACTCGGCG GGGGTCGGGC TGAGGAATGT GCAGGCTGGG
AGTGCTTCCG TGCCCGGGGC GGCGTCAGAG CCGGGGCTAG GATCTGGGGT TGGGTTCGGC
GCAGGACTGC GGGCCAGCTC GCGCTCGGAA GTCTTGGGTG GGTGGAATGA GGGCTCTGGC
TTTGTCGGGC GGCGCACGGA GCTGCGCGGT CTTCTGCGTA TCTTGCGGTC GGATCTGCCG
CGTGTGATCT TGTTCGGGAT GACCGGGATC GGCAAGAGCG CGCTGGCCGC TGAGCTCATT
ACGCTCCTCG ACCCGGGGGC GTGGGTGGTC GTGCCCCTGG ATGCAGGGGC GGCTGCGGAC
AGTGTGGTCA GCACTCTGCT TGGGGTGTTA AACAGGGTTG GCGCGTTGGG CAATCCGATG
CTCGAGTCCT GGCTTTCCGA TCCGGATACG CCATGGATCA GGCGTCTGGA TCTCGTAAGT
GAGAACGTGC TGCCGCACAC CCGCGTGCTG CTGATGGTTG ATGGGGTCTC CTGTTCAGGC
GATCCGGCGA CGGGAGCGTA CGCAGCAGAG CCTGCGGAGC TGGGTTGGTT TCTGGACGCT
TGGTCGCGAC TCGGGCCGAA CGCGGGGCTA CTCGTCACGT GTCGTCATCC GATTTCATTC
GAGACGCGTG GTAGGAAGCT GGTGCAGCAT TGTCTACTCG GGCCGTTGTC GGCGTCCGAC
ACGCAGACTT TTCTCTATCA GCATGCGCCG CAGCGGAGTG CTCTGTTCGC GAAGCTGCCC
GATGCTGGGT TACTCGGCGG CCATCCTGCA GCGCTTGGGC TCGTCGCGAA TGCCGTGCGC
AACGCCCAGG ACCCGACCGC GCTGAGCCCA GAGGTGATCC ATCATGCGCT GAACGAGACA
GCGCCGGCTC TCGACGAGGT CTTCGAGCTG TTCGCGGGCC TCGATGCCGG GCATCCAGTG
CGCCAGCTGC TTGTTGGCGC GTCGGTATAC CGGGGGCCGG TACGGCGTGA GGCCTTGGAG
CAGCAGCTTG CCTTGACGGA TCAAGCTGCT ACGAATCCGG AGCGCACGAC GCGGCTGACC
GTAGCCTTGG AGAATGTTCT GCGCGAGGCC CAGACCGAGG ACGTATCCGA GCTGTGGTGG
GAGGATGGAG AGCCGTTACA ATTCTCTGAA ACGCTGCTCG CGGACCTCGA GGATGCACAG
CGACCAGTCG TAGATCCGTC ATTCCCTGAG GTGCTACGTA GCGCGCTGGG CACCGGACTC
ATCTTCGGGT CTTATGACAA CCGGTCCGGA GTGGAGAATC AGAACGGAGC GGACGACGGA
AACGAGGCGA ACCGCGAGCC GTTCAAGGTT CATCCATGGG TGGCCGCGCA GATTAGTGCG
CTGGCCGACC AGGCTGAGGT GGACGCCGCT CGCCGCCGGG CTGCGTCCTA CTGGCGCCGC
CGACTGAACA TGGACCTGGC GCGCGGGCAC CTGCCGTCGC TAAGCGAAGA CGCTGAGCGT
CTGTTGGAGC AGTTCGACGC TCTAGGCGAC ATGGCCGCAG CCAAGGAGCC GCTGCTGAGA
TCGGTGAGCC TGGCGTACCT GCGCGGGACC GGGGGCTACG AGCAGTTGCG AGAGCGTTGC
GAGCTGGGCC TCGCGCACCT GCCGCTCGAA CCGAAAGAGA CCGTGGTGTT GCTGCTCCTG
CACAGTGTCG CCTGCTACGC GATGGGTGAC GAGGCCACAG GGGCGTGCAG CAGCGAACGA
GCTGTCGAGG CAGCACGGAG CCTGCCCATG AACTCGCCCA CTCGAGTGCA GACCGTCATC
ATGCATACAC GCAACCTACT GAGACTGCCG CAACGGGCCG GCGAAGTCGC GACACTCATC
GATGAGGCTG CGGAGGGCGC ACGGGCCTGC GGATACGACC TCCTGGATGG AGCCGTTGAC
CATCTGCGGG CGATGCTGGC AGTCAGGCGC CAACAATTCG ACGAATGCGA CCAGTTCGCT
CGCGCGGCCT TGCACACGGT CGCCGGGGTC GCACCTATCT GGTACACCCG GGCGGTGCAG
TGGGAGGACG TCGTGGACCT CTCCGAGGCG TTGAGGTTGG GCGAGTTGGC CGGGGCGGCA
AGTGATCAGG CCATCCTGGC GGAAGGCCTC GGGATCGCCG CCGACACAGC CGAACTGGGC
TGCCTCGGCC TGTGCGCCGC CATAGCGCTG GAGCGCGGCC GGCTCGATGA AGCGGCCGCG
TTCATGGACA GGGCACGGCA AGTGGCCGAC CGCACTCCTC TACCCGGCCA GCTTCCGCCG
ATTTACGCCC TAGACTCGAC CATCGCCCTG CTCCAAGGCG ATATCTCTCG GGCCGGAGAG
CTGTGCCGAG CCGGTGTGAC CTCGGCTCGG GCGTTCGATG ACCGAGTGAG CGAGACCCGG
TGCCTTAACC TGCTGGGCCA GATCGCCATG CACGGCGGCC AGGCGAACAC CGCGCTGCGC
GAATTCGGCG CGGCGTACGC CTGCGGAATC GGCACCGTGG CGGACGACCA GGCCAGGGTC
TCAGCAGTGT TCTGCGCCTT CGTCTACACG ACGATGGAGG ATCCGCGTGC GCGGGACTGG
CTGGACAAGG TCGGCGACAC GCTGCCCACT GATCCGGGGG CAAACTCCCT CGCACAGTAC
ATGATCGGCC AAACCGCCCT GGTCGAGGGC GACTTTGCAA CAGCCACGCG GCACGCGCAG
GACATGCTCC GCGTCATCGA AGAGGGCGAC TATCCTCAGA TCTCTTGCAT GGGGAAGCTG
CTACTAGCGC AATGCGCCGC CGGGCGCGAC GACTGGGACG CCGCTGGAGA ACTGTTCAGC
GAGGCGATCG ACGCCTCCGA GGTATGCGAC CAGCCTTTGC TAAGGTTCGA CGTGCTGCTC
AGCGGAATCG AGATGGTCCT CACGATCGAC GAGCCGGTGA GTGTTGGCGA CCTCGACGCG
CTCGATGAGA TGGCGCAGGA GGCAGAGGCG ATTGCGCAGG GGGCGGATGC GCCAGGACTG
ATCGCCCGGG TCTTGCAGGC CCGGCAACTG ATCAGGGGCC GCAGACGCGG CCCGCTAGGG
TCCGGCTTTG CCGGTCCGCT GCTCAGGGCG AGCCGTGATG TCGGGGACGC GGAGGCCGTC
GAGAACGCAA TCGTGGCGCA GTTCCACGAG GCGCTCAACG CTGAGCGGTT TGAGGAGGCC
TCGGAGCACC TGGCGTGGCT CAAGTCGGTC GTCGAGGCCG GCAACGAGGG CAAAAGGCTC
TTGCTCGGGT TGATGGAGGC CTCGCTTGAC CTCGAACAAG GGCGTCTCAC CGAAGCCGAG
GAGCGTATGC TGCAGGTCTA CGCCGCAGCC GACGCGGGCG GACCGGACAT AGCCGAACTC
GCCGCGATGG CTGCGGGCCT GCTGGCCGCG ATGGCCGCAG AGACCTCGGA TCTCCACAAG
GCAGAATGCT GGCAGGCGAC TGCGTTAAGG CATCTAATCA CGGGCACCGC AGAGTGGTAC
CAGGAACTCG ACGGGTTGAA AGATATGGCC GAGGAACGCG CGGCAGCCGA CCCCGCCGCC
TGGTGGCAGA ACCTGGAAGC GATCGCCGAC GACGCTGTGG CCCGTCACCC CGCGCTTCCC
GACCTCGCCG CGGCGGTCCA CCAGATCTTG GCCAAGATCG CGGATGACCA CGGGCCCGCA
GCACAGCGGG AACGCTGGCT GCGGCAGGCG TTAAGTCTGT GGCCGACGGA CGTGCCGGAG
CACTCCGATT ACGGGCCCCG GGCGACCAGG CACGCTTTGG CCCGGCTGCT CGCGCGCGAC
GAGGAGACCC TCGACGAGGC GACCTCGCTA TTGATCTACA ACCTGTGCCG TTCCGAGGAG
GACGGAAGCG GCTACCACGA CCCATTCGAC GAACTTCTTC TCGGCGTGCT GCGGCAGTAC
TGGGGCGAAC CGGTATTTGC TGCGAAGCTT GCCACGCAGG CAGACGCCGA GCAGCAGGCT
CGGATTCTCG CCGCCACGAG TGACTGGGGA AGTGCTTCCG ACCAGATGTA A
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| Protein sequence | MDMGAGLGDS HSAVLQIDGG LVRFKAGAGS VAQEHSGLTY RAREALRELR ELRQGTDAVW
WELGLGLGES FLDGPVGVAL AAELGRAAQT EVPLRLALDI AEPALVNVPW EAMVLPERCD
RSRRQIPLAH DSAVQVFRLV EQESATGTAV RATPGVVGRT AGGVAGGPAR LPRDAGSNGA
PLEVLVAIAF PERSGLDRLD YERELVLVQR AMRPAIETGM VSLRLLTWGT ADSIGAALRE
RPADILHISC HAAPGVLALE TVDGEEDFVD AGTLVSRVFP QDRPVPMVVL AGCSSALGTV
DDVQGPLPGL AHALVARGVD AVVAMTADIS DDCAVEFTAG LYATLAQDPT LAPLDVVTQT
RAALAPLPPR EPGMTEPQQE PARERGREQA DRNGREARTT LIPALFLNSA GVGLRNVQAG
SASVPGAASE PGLGSGVGFG AGLRASSRSE VLGGWNEGSG FVGRRTELRG LLRILRSDLP
RVILFGMTGI GKSALAAELI TLLDPGAWVV VPLDAGAAAD SVVSTLLGVL NRVGALGNPM
LESWLSDPDT PWIRRLDLVS ENVLPHTRVL LMVDGVSCSG DPATGAYAAE PAELGWFLDA
WSRLGPNAGL LVTCRHPISF ETRGRKLVQH CLLGPLSASD TQTFLYQHAP QRSALFAKLP
DAGLLGGHPA ALGLVANAVR NAQDPTALSP EVIHHALNET APALDEVFEL FAGLDAGHPV
RQLLVGASVY RGPVRREALE QQLALTDQAA TNPERTTRLT VALENVLREA QTEDVSELWW
EDGEPLQFSE TLLADLEDAQ RPVVDPSFPE VLRSALGTGL IFGSYDNRSG VENQNGADDG
NEANREPFKV HPWVAAQISA LADQAEVDAA RRRAASYWRR RLNMDLARGH LPSLSEDAER
LLEQFDALGD MAAAKEPLLR SVSLAYLRGT GGYEQLRERC ELGLAHLPLE PKETVVLLLL
HSVACYAMGD EATGACSSER AVEAARSLPM NSPTRVQTVI MHTRNLLRLP QRAGEVATLI
DEAAEGARAC GYDLLDGAVD HLRAMLAVRR QQFDECDQFA RAALHTVAGV APIWYTRAVQ
WEDVVDLSEA LRLGELAGAA SDQAILAEGL GIAADTAELG CLGLCAAIAL ERGRLDEAAA
FMDRARQVAD RTPLPGQLPP IYALDSTIAL LQGDISRAGE LCRAGVTSAR AFDDRVSETR
CLNLLGQIAM HGGQANTALR EFGAAYACGI GTVADDQARV SAVFCAFVYT TMEDPRARDW
LDKVGDTLPT DPGANSLAQY MIGQTALVEG DFATATRHAQ DMLRVIEEGD YPQISCMGKL
LLAQCAAGRD DWDAAGELFS EAIDASEVCD QPLLRFDVLL SGIEMVLTID EPVSVGDLDA
LDEMAQEAEA IAQGADAPGL IARVLQARQL IRGRRRGPLG SGFAGPLLRA SRDVGDAEAV
ENAIVAQFHE ALNAERFEEA SEHLAWLKSV VEAGNEGKRL LLGLMEASLD LEQGRLTEAE
ERMLQVYAAA DAGGPDIAEL AAMAAGLLAA MAAETSDLHK AECWQATALR HLITGTAEWY
QELDGLKDMA EERAAADPAA WWQNLEAIAD DAVARHPALP DLAAAVHQIL AKIADDHGPA
AQRERWLRQA LSLWPTDVPE HSDYGPRATR HALARLLARD EETLDEATSL LIYNLCRSEE
DGSGYHDPFD ELLLGVLRQY WGEPVFAAKL ATQADAEQQA RILAATSDWG SASDQM
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