Gene Caci_3742 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_3742 
Symbol 
ID8335095 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp4223659 
End bp4224783 
Gene Length1125 bp 
Protein Length374 aa 
Translation table11 
GC content69% 
IMG OID644956882 
ProductRicin B lectin 
Protein accessionYP_003114485 
Protein GI256392921 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2755] Lysophospholipase L1 and related esterases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00367387 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.957672 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCGTAGAC AAAAGCGGTG GTTCAACGCG ATGGTGTCGG CCGGCGCCGC GCTGGCCATG 
ACCATCGGGC TGGTGGGGAT CGCCGGAACC CAGAGCGCGG CCGCGGAATC CAACGGCGGC
GTCAAAGTGA TGCCGCTGGG CGACTCGATC ACCGACGGGA TCACGGTGTC GGGCGCCTAT
CGCACGGGCC TGTGGCAGCG CTTCGTCGCC GGCGGCTACA AGGTCGACTT CGTGGGCTCG
CTGTCCGGCG GCCCGGCGGC CCTGGGAGAC CACGACCACG AAGGCCACTC CGGCTGGCGC
ATCGACCAGA TCGACGCGAA CATCACCGGC TGGCTCCAGA CCTACCAGCC GCACACCGTC
CTGCTGCACA TCGGCACCAA CGACATCCTG CAGAACGACG ATGTCTCCAA CACCCCCAAC
CGGCTCTCCG GCCTCATCGA CCACATCACC GCCGCCGACC CGGGCGCCGA GGTGTTCGTC
GCCCAGATCA TCCCGCTGGC CAACTCCGGG CAGAACGCCC AGGTGCGCAC CTACAACGCG
GCGATCCCCG GCATCGTGTC GAGCAAGGTC TCCGCCGGCA AGCACGTGCA CCTGGTCGAC
ATGTACGACG CGTTGACCAC GTCCGACCTG GCCGACGGCG TCCACCCCAC CGCCGCCGGC
TACGACAAGA TGGCCGCGGT CTGGTACTCG GCGCTCCTGT CGGTGTCCGG CAGCATCGGC
CAGCCCGGCA GCACCGGCGG TGGCGGCGCC ATCGTCGGAA CCGCCTCCGG CCGCTGCGCG
GACGTCCCCA ACTCCACCCA GACCCTCGGC ACGCAGGTCC AGCTGTGGGA CTGCAGCGGC
GCGACGAACC AGCAGTGGAC CGCCACCTCC GCCGGCGAGC TGCGCGTCTA CAGCGGCGAC
TGCCTCGACG CCTACGGCAA GGGCACCACT CCCGGCACCA AGGTCGCGAT CTGGTCCTGC
AACGGCCAGA CCAACCAGCA ATGGCGTCTG AACGCCGATG GAACCATCAC CGGCGTCCAA
TCAGGACTCT GTCTCGACGC CACGGGAGCC GCCACCGCCA ACGGCACCCT GCTGGAACTG
TGGACGTGCA ACGGCCAGAG CAACCAGCAA TGGACGCGGA GGTAG
 
Protein sequence
MRRQKRWFNA MVSAGAALAM TIGLVGIAGT QSAAAESNGG VKVMPLGDSI TDGITVSGAY 
RTGLWQRFVA GGYKVDFVGS LSGGPAALGD HDHEGHSGWR IDQIDANITG WLQTYQPHTV
LLHIGTNDIL QNDDVSNTPN RLSGLIDHIT AADPGAEVFV AQIIPLANSG QNAQVRTYNA
AIPGIVSSKV SAGKHVHLVD MYDALTTSDL ADGVHPTAAG YDKMAAVWYS ALLSVSGSIG
QPGSTGGGGA IVGTASGRCA DVPNSTQTLG TQVQLWDCSG ATNQQWTATS AGELRVYSGD
CLDAYGKGTT PGTKVAIWSC NGQTNQQWRL NADGTITGVQ SGLCLDATGA ATANGTLLEL
WTCNGQSNQQ WTRR