| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_3722 |
|---|
| Symbol | |
|---|
| ID | 8335075 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 4188976 |
|---|
| End bp | 4191465 |
|---|
| Gene Length | 2490 bp |
|---|
| Protein Length | 829 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644956862 |
|---|
| Product | beta-mannosidase |
|---|
| Protein accession | YP_003114465 |
|---|
| Protein GI | 256392901 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3250] Beta-galactosidase/beta-glucuronidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.225844 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.26439 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCCGA CCCTCACGAG CCGCACCGAG CTCACCGCCG GCTGGACGCT GCGTGCGGTC
GGCGGCGACG TGCCGCCGGA ACTGGCCGGG GTGTCCGTGC CGGCGACCGT CCCGGGGTGC
GTGCACCTGG ACCTGCTTGC CGCCGGGCTC ATCCCCGATC CGTACCTGGA CGAGAACGAG
AAGCTGTTGG GCTGGATCGG GCGCGTGGAC TGGCGGTACG AGACGACGTT CGGCTGGGAC
GGCCCCAACG ATTCCACGGA TCTGGTCGCG CTCGGGCTCG ACACCGTGGC GGTCGTCGAG
CTCAACGGAG CCGTCGTCGC CGAGACCCGC AACATGCACC GGAGCTACCG CATCCCCGTC
TCGGACCTGC TTCATCAGGG TACGAACACG CTCGCCGTGA CGTTCACCGG CGCCTTGACC
GCCGCCGAAC AGGCCGAGAA GGAACTCGGC GCGCGGCCGC ACGTCAACCG GCACCCCTAC
AACGCGATTC GCAAGATGGC CAGCGACTAC GGATGGGACT GGGGACCGGA GATCATGACC
GCCGGGATCT GGCGGCCGCT GTATCTGGAG TCCTGGCGGC AGGCCGGAAT CGATGCCGTG
CGGCCGTTGG TCGCGCTCGA TGGCGACACC GGGGTCGTGT CAGTGTTCGT AGATCTGCGG
TGGGCGCCCG AGTCGGCGGA ACCGCTGCGG ATGGAGGTGT CGGTCGGGGA CGTGCTGAGT
TCTGTGGATG TTCCCGCCGG GCTGCGTTCG GCGTTCGCCG AGGTTCGGGT GCCCCTGGCG
AAGAAGTGGT GGCCGCACGG GTACGGCGAA CAGCCTCTGT ATGACATCGG GGTTCGGTTG
CTCGGCGATG ACGTCGTCCT CGATGCGTGG CACGGCCGGA TCGGATTCCG CACGGTCGAA
CTCGACACCA CGCCGGATGA GCACGGAACG CCCTTCACCT TGGTGGTCAA CGGCCAGCCG
GTCTTCGCAC GCGGTGTCAA CTGGGTGCCA GGGGACTGTT TCCCCTCCCG TGTCGGACCA
GAGCTTTACG AGCAACGCCT CATCCAGGCG CGCGAGGCCA ACGTCAACCT GATCCGCGTC
TGGGGCGGGG GCATCTACGA AAGCGACGCC TTCTACGACC TCTGCGACGA ACTCGGTCTG
CTGGTCTGGC AGGACTTCCT CCTTGCGTGC GCCGCCTACT CCGAAGAAGA GCCACTGCGC
AGCGAGATCA TCGCAGAAGC CTGCGAAGCC GTGACCCGGC TGAGCCCGCA TCCGTCGCTG
GCGTTGTGGA ACGGCGGCAA CGAGAACGTC TGGGGCTACC ACGACTGGGG CTGGCAGGAA
GAACTGGACG GCCGCAGCTG GGGATGGCAG TACTACAGCC AGATCCTCCC CGACATCGTT
CGCGAGCTCG ATCCGACCCG ACCCTACGTC CCCGGATCGC CCTACTCTCC GGATCCCGCG
CTCCACCCCA ACGATCCCGA CCACGGCACG ATGCACATGT GGGACGTCTG GAACGAGCTC
GACTACACCC GCTACCGCGA CCACACCCCG CGCTTCGCCT CAGAATTCGG CTTCCAGGGC
CCGCCGACCC TCAGTACCCT GACACGAGCC GTCCACGACC GGCCGCTGCG TGTCGGCTCG
GCCGCCATGC TCGTCCACCA GAAGGCCGAC GACGGCGACG GCAAACTCGC CCGCGGCCTG
GCCGGGCACC TGCCGGCGCC GGCCACGTTC GAGGACTGGC ACTGGGCCGC GTCGCTGAAC
CAGGCGCGCG CCGTGGCGTT CGGCGTGGAG CATCTGCGCT CGCTGACCCC GCGCTGCATG
GGCGCCGTGG TGTGGCAGCT CAACGACGTG TGGCCGGTCG TCTCCTGGTC CGCCGTGGAC
GGCGACGGAC GCCGCAAACC GCTGTGGTTC GCGCTGCGGC GCGCGTTCCG GGACCGGTTG
CTGACGATCC AGCCGCGACC GGACGGCCTG ACGCTCGTCG CGGTCAACGA CAGCGGCGAG
CCGTGGCGCG CCGAGGTGCC GGTGACGCGG TTCGACATCG ACGGGACGGC GCTGGCCAGC
CAGATGGTGA GCGTCGAGGT GGCGGCGCGC GGCGTGGCGG CGTGGGTGTT GCCGCCGCGG
ATCACCGAAC CCGACGATCC GGCGCGCGAG CTCATCGCCG CCGGGCTCGG CGCGGACCGG
ACGCTCAGCC CGTTCCGGGA GGACGTGGAC GCCGCGCTGC CCGAGGCGCG GCTGCGCACC
CGGGTGGAGC GCGTCGCGAC CGGATACCGT GTCACGGTGA TTGCCGAGAC CTATGTCCGC
GACCTGGCTT TGCTGGCCGA TCAGGTCGCC GCCGACGCGC AGGTGGACGA CGCCCTGGTG
ACGTTGCTGC CCGGCGAGCA GGCGGTGTTC GACGTGCGCA CGTCGGCGCT CGTGGACCCT
GACGCGTTCG ACGATCCCGC GGTCCTGCGC TCGGCGAACC AGCTGGTCAC CGGCGACGGC
GTGGCCGACG TCCGCGGCGG CGGCCGGTGA
|
|---|
| Protein sequence | MTPTLTSRTE LTAGWTLRAV GGDVPPELAG VSVPATVPGC VHLDLLAAGL IPDPYLDENE
KLLGWIGRVD WRYETTFGWD GPNDSTDLVA LGLDTVAVVE LNGAVVAETR NMHRSYRIPV
SDLLHQGTNT LAVTFTGALT AAEQAEKELG ARPHVNRHPY NAIRKMASDY GWDWGPEIMT
AGIWRPLYLE SWRQAGIDAV RPLVALDGDT GVVSVFVDLR WAPESAEPLR MEVSVGDVLS
SVDVPAGLRS AFAEVRVPLA KKWWPHGYGE QPLYDIGVRL LGDDVVLDAW HGRIGFRTVE
LDTTPDEHGT PFTLVVNGQP VFARGVNWVP GDCFPSRVGP ELYEQRLIQA REANVNLIRV
WGGGIYESDA FYDLCDELGL LVWQDFLLAC AAYSEEEPLR SEIIAEACEA VTRLSPHPSL
ALWNGGNENV WGYHDWGWQE ELDGRSWGWQ YYSQILPDIV RELDPTRPYV PGSPYSPDPA
LHPNDPDHGT MHMWDVWNEL DYTRYRDHTP RFASEFGFQG PPTLSTLTRA VHDRPLRVGS
AAMLVHQKAD DGDGKLARGL AGHLPAPATF EDWHWAASLN QARAVAFGVE HLRSLTPRCM
GAVVWQLNDV WPVVSWSAVD GDGRRKPLWF ALRRAFRDRL LTIQPRPDGL TLVAVNDSGE
PWRAEVPVTR FDIDGTALAS QMVSVEVAAR GVAAWVLPPR ITEPDDPARE LIAAGLGADR
TLSPFREDVD AALPEARLRT RVERVATGYR VTVIAETYVR DLALLADQVA ADAQVDDALV
TLLPGEQAVF DVRTSALVDP DAFDDPAVLR SANQLVTGDG VADVRGGGR
|
|---|
| |