| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_3679 |
|---|
| Symbol | |
|---|
| ID | 8335032 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 4118058 |
|---|
| End bp | 4119515 |
|---|
| Gene Length | 1458 bp |
|---|
| Protein Length | 485 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 644956819 |
|---|
| Product | Carboxylyase-related protein |
|---|
| Protein accession | YP_003114422 |
|---|
| Protein GI | 256392858 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0043] 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases |
|---|
| TIGRFAM ID | [TIGR00148] UbiD family decarboxylases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.416994 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCGGGC GCCGGCTCGC GGATCTGCGG ACCGCGCTGG CCGGGCTGGA TTCGGCGCCC
GGGGAGCTGG TGCGGGTACG GGAGGAGATC CCGGCGCGGT TCGGGGTCGG CGCCCGCTAT
GCCCGGTGGG CCGGGACGCC TGCGGCGCCG CCCACCGGGC CCGGTCCGGT CGTGCTGTTC
GAGCACGTCA GGGCCGACTC CGGTGCGAGC GGGCCGGTGC TGATGGGGTT GTACGGCACC
CGTCGGCGCG CGGCGGCGCT GCTCGGGCTG GAGCCGGCCG AGGTGCCGTT CCGGCTGCTG
GAAGCGGTGG GCAAGCCGGT GGCGCCGGTC CTGCTCGCTG AGGACTCGCG TCCCGAGCGC
GCCGCGCGGC CGGCCGACCT GACCGCGTTG CCGATCCCCG TCCTCACCGA CGCCGACGCC
GGTCCGTACC TCACCCTCGG CGCGGTGCTG GCCACCGATC CGGACACCGG CGTCCGGAAC
CTGTCGGTGC ACCGCATGTG CGTGCAGGGC CCTGACACCC TCACCATCTG GATGGTGCCC
GGCCGCGATC TGGAGCGGGC TTACAACGCC GCGCTGGCCC GCGGCGAGTC GCTGCCGGTG
GCGATCCATC TCGGCGTGCC GCCCGCGGTG CTGCTGGCCT CGTGCTGTCC GTCGTCGCTG
GTGCCGCCGG AGGTGGACGA GATCGCCGTG GCCGGCGCCA TAGGCGGCGC GCCCGTGGAG
CTCATGCCGT GCGGGAGCAT CGACGCCGAG TGCATCGCGC ACGCCGAGTA CGTCATCGAG
GGCGAGATCC TGGACAAAGT GGTGCCGGAG AACCCGGCCG GTCCCTTCGC CACGCCGGAG
TTCCTCGGCT ACCGAGGCCG CGCGCACCCC GCCCTGCCCG TGATCCGGGT TTCGGCGATC
ACCGCGCGGC CGGGCGCGAT CCTGCAAAGC GTCAGCGGTC CCGGCCTGGA GCAGTCGGTG
CTCCTCGGCT ACGGCATGGA GGCCGCGGTC CTCGCCTTCC TGCGCGAGCG CGGCGCCCCG
ATCGTCTCAG CGCTCTGCCA CACCGCCGGC GGCGGCCAGC TCATGCTGGT CCTGCGCTGG
CGCAAGCGCT CCGGCGAGGA CGACGCCTTG GTCCGGGACT GCTGCGAGGC CGTGCTGGAG
ACGTTCCGCA TGGTCAAGAC GGTGCTGGCG GTCGACGAGG ACGTGGACCC CGAATCCGAC
CAGGACCTGT GGTGGGCGAT GGCGACCAGA TTGCAGGCCG ACCGGGACAT CACGATCCTG
CCGGACCGGG AAGGCTTCGC GCTGGATCCG TCGCAGTCCA CTGTCTACTC GCCGAACCTG
TCCGGCGACG GCCGCACCGC CAAAGCCGTC TTCGACTGCA CCGTCCCCTT CGCCCTGCGC
GACCGCTTCA CCCGCGCGGA GTTCACTCCG GAGCCCGCAG GCGGCGCACG GCGGCAAGCC
GCGCGACGCC CTCGGTGA
|
|---|
| Protein sequence | MTGRRLADLR TALAGLDSAP GELVRVREEI PARFGVGARY ARWAGTPAAP PTGPGPVVLF
EHVRADSGAS GPVLMGLYGT RRRAAALLGL EPAEVPFRLL EAVGKPVAPV LLAEDSRPER
AARPADLTAL PIPVLTDADA GPYLTLGAVL ATDPDTGVRN LSVHRMCVQG PDTLTIWMVP
GRDLERAYNA ALARGESLPV AIHLGVPPAV LLASCCPSSL VPPEVDEIAV AGAIGGAPVE
LMPCGSIDAE CIAHAEYVIE GEILDKVVPE NPAGPFATPE FLGYRGRAHP ALPVIRVSAI
TARPGAILQS VSGPGLEQSV LLGYGMEAAV LAFLRERGAP IVSALCHTAG GGQLMLVLRW
RKRSGEDDAL VRDCCEAVLE TFRMVKTVLA VDEDVDPESD QDLWWAMATR LQADRDITIL
PDREGFALDP SQSTVYSPNL SGDGRTAKAV FDCTVPFALR DRFTRAEFTP EPAGGARRQA
ARRPR
|
|---|
| |