| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_3510 |
|---|
| Symbol | |
|---|
| ID | 8334863 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 3914376 |
|---|
| End bp | 3915701 |
|---|
| Gene Length | 1326 bp |
|---|
| Protein Length | 441 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644956654 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003114257 |
|---|
| Protein GI | 256392693 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3483] Tryptophan 2,3-dioxygenase (vermilion) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.0468884 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGATGG ACGAGCCGAG CCTGGAGCAG GATCTGGCGG CGTGGTCAGC GGACCCGGTC
CCGGCGCACT TCCCGTACCT GCCGGTGGTC GGCGCCTTCC ACAGAGCCGG CAAGCACTTC
GTGGCCGCGA GCGTGCTCAA GCACCTCGAC GTCGCCCGCG CCACCCTGTC GCAGAGCCCG
TATCCGGACC CGGCGCTCGC GCGCTTCCTG GACGTCGTGC TCGACAAGTT CGACGAGCGC
TATGACTACC AGACCTACCT GGCCCTGAGC CTGATCCCGA TGCCCGAGAG CGGCGCGTCA
GCCCTCGAAG ACGCCACCAG CGGCGTCGCG CAACGGCAGC ACGACCGGCT GCTGGTCCAG
CTCGGCGCCG ACGCGCTCGC CTTCGAACTG GCCGCTCTGG ACGGACGCAC CGACCTGTTC
CCGCACCTGC GTCCCGATCC GCCGGTCGCA GCCAAGCGGT GCCGGCTCGG GCTGCGCTCC
CTGGGACCCG CTCTGGAGCG GCTGGGCCTG GCCGAGGGCC TGGAACCGGC GCTGCGTCCA
GGTTCGGAGG GCGACCCGCT CACCGCGGCG CGGCAGATCT GCGCGCGGGT CAGAGCCGAC
GCCTCGCCCG AGGAGCGGCG CGTCACCGAT CTGTCGATCC TGCCGGTATG GACCTCCCAC
GACGAGTACC TGTTCCTCAG GGTCCTGCAA ACCTTCGAGA CCCGCTTCGC GCTGCTCGCC
GTACGGTTGC AGGCCGCCCT GAACGCCCTG GCGATCGGAC GCCCGCGCCT GGCCGTCGCA
GAGGTCGGCA ACGCCCAGGC GGGACTGGAG GAATCCTTCC GGCTCTTCTC GCTCCTGGCG
ACCATGCAGA TCGAGTCGTT CCAAGAGTTC CGACAGTACA CCGAGGGCGC CAGCGCCATC
CAGTCGCGCA ACTACAAGCT CGTCGAATCG CTGTGCCGCG TCCCGGACGG AGACCGCCTG
GACTCCCCCG CGTACCGTTC GGTGCCCGAG CTGCGCGAAC GGGTCCTGCA AGACCCGCCG
AACCTGGACG ACGCGGTCTG GCTCGGCAGC CAGACCGGCG CGCTCTCGAG CACCGAGCGG
CGCGAAATGG CCGGCGCGCT GCAAGGCTTC GCCGCGCAGC TGCTGCAATG GCGCCAGACG
CACTACCGCC TGGCGGTACG GATGCTCGGC GACCGGCCGG GCACCGGCTA CACCGAGGGC
ACGCCCTACC TGAGGGAAGT GCGCACCATC CCGGTGTTCG CCAAGAGCAC TCCGGATATC
AGCGTACGTA CATCAGACCC TTCTGCAGGA CGAATGCCAC CGCGACCGTC CGGTTCGGGC
AGTTGA
|
|---|
| Protein sequence | MSMDEPSLEQ DLAAWSADPV PAHFPYLPVV GAFHRAGKHF VAASVLKHLD VARATLSQSP
YPDPALARFL DVVLDKFDER YDYQTYLALS LIPMPESGAS ALEDATSGVA QRQHDRLLVQ
LGADALAFEL AALDGRTDLF PHLRPDPPVA AKRCRLGLRS LGPALERLGL AEGLEPALRP
GSEGDPLTAA RQICARVRAD ASPEERRVTD LSILPVWTSH DEYLFLRVLQ TFETRFALLA
VRLQAALNAL AIGRPRLAVA EVGNAQAGLE ESFRLFSLLA TMQIESFQEF RQYTEGASAI
QSRNYKLVES LCRVPDGDRL DSPAYRSVPE LRERVLQDPP NLDDAVWLGS QTGALSSTER
REMAGALQGF AAQLLQWRQT HYRLAVRMLG DRPGTGYTEG TPYLREVRTI PVFAKSTPDI
SVRTSDPSAG RMPPRPSGSG S
|
|---|
| |