| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_3464 |
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| Symbol | |
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| ID | 8334817 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | + |
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| Start bp | 3844552 |
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| End bp | 3846501 |
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| Gene Length | 1950 bp |
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| Protein Length | 649 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644956608 |
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| Product | Carbohydrate binding family 6 |
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| Protein accession | YP_003114211 |
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| Protein GI | 256392647 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG5434] Endopolygalacturonase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.235288 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0024319 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTTCCTCC ATCGAAGCAG GCGCGCACGA CGCCGCATCC CCCACCTCGC GGCCGCGATA
GCCGCGACCG GCGTCGCGGC CCTCGCCCTC GCGGGCGTCC AAGGCACAGC CCTGGCCGCG
TCGGCCGCCC CCCACCCCGC AGCCGCCAAG GCCGCCGCCG CGGTCTTCAA CGTCAAGGAC
TACGGAGCCA CCGGCAACGG CTCCACCAAC GACTCTCCAG CCATCAATAA GGCGGTCGCC
GCCGCGAACA CCGCCGGCGG CGGCATCGTG GAGTTCCCGT CCGGCAGCTA CAAGTCCGCG
AACACCGTCC ACCTCAAGAG CAACGTCACC ATCCAGCTCG ACGCCGGCTC CAAAGTCCTC
GGCTCCAGCG CCAAGACCTA CGACGCCGCC GAGTCGAATC CCAACGACAA GTACCAGGAC
TACGGCCACA GCCACTTCCA CGACGCGATG TTCTCCGGCG ACAAACTCTC CAACATCGGC
TTCACCGGCT CCGGCACCAT CGACGGCGGC GGCAACCTGA TCACCGGCAA CCCCGGCGCC
GGGCAGGCCG ACAAGATCCT GTCACTGACC CGCTGCACCA ACCTCACGCT CAGCGGCATC
ACCCTCACCC GCGGCGGGCA CTTCGGCGCG CTGATCAACG GCTGCGACGG CGTGGTGTCC
GACCACCTCA CGATCGCGAC CTCCAGCGAC CGCGACGGCT GGAACATCAT CTCCACGACG
CACGTCACCA TCACCAACGC GAACATCTCC TCCAACGACG ACGCGCTGGT GTTCAAGAGC
GACTGGGCCC TGGGCCAGAC GCTGCCCAGC GGCCACGTCA CCGTCACGAA CAGCACGCTG
CAGGCCAAGT GTTGCAATGC CCTGATGTTC GGCTCGGAGA CCTGCGGATC CTTCACCGAC
TACCGGTTCC AGCAGATCAC CATCCTCGGC GCCGGCAAAT CCGGGCTGGG CATCGTGAGC
ATGGACGGCG CAGACATCTC CGACGTGCAC TACCAAGACG TCACCATGAC CGGTGTGCAC
TCGCCGATCA TGGAGAAGAT CGGGACCCGA TTGCGATGCG GCGGCAGTCC GAAGGTCGGG
CATATCAGTA ACGTGACATT CACCAACGTC ACGGGCACCG GCGTGGCGAG TACGGACTAC
AGCCCGACGA TCTGGGGCGC CGACAGCAGC CACCAGGTCA GCGACGAGAC CTTCACCAAC
GTCAACCTGA CCGTCCCCGG CGGCCACGGC ACGATGTCCA CCGGCGTCCC CAGCGACAAC
GGCGACTACA ACCCGAACAG CATCGGTACG CGGCCGGCGT ACGGCTGGTA CCTGCACAAC
GTCTCCGGCA TCCACTTCAC CGGCGGCTCG GTCAAGGTCG CCAAGACCGA CGGCCGCCCC
GCGGTCATCG CCAACGCCGG CAGCGCCATC ACCTTCGACG GACTGACCGC GCAGACCGGC
AGCTCCAGCC CGTTCGACGT CGGCTTCCAG AACATCACCG GATACTGCCT CAGCAACAGC
CACAACACCT CCGGCGGCGC GCTGCGCGTC TCGGCCAGCG GCTCCACCCA AAGCTGCGGC
TCCTCGGCGA CACGCTATGA GGCGGAGAAC GCGACGCTGT CCACCGGCGA CACCGTGGCC
ACCAACCACA CCGGTTTTTC CGGCAGCGGC TTCGTCGACA CGACCAACGC CGTCGGTGCG
TACGTCGAGT GGACCGTGAC CGCGCCGGCC GCCGGCACGT ACACAGCCAC CGTCGGCTAC
GCGAACGGAA CCACCACCGA CCGGCCGATG GACGTCGCCG TGAACGGCAC GACCGCGGAC
GCCGCAGCGT CGTTCCCCAC GACCGCGAGC TGGAACACCT GGGCCGGCAA GGCATTCAGC
GTTCCGTTGA ACGCCGGCGC CAACACCATC CGGGTAGCCG CGAGCACCGC GAACGGCTGC
CCGAACCTCG ACTACCTCGA CCTCGGCTGA
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| Protein sequence | MFLHRSRRAR RRIPHLAAAI AATGVAALAL AGVQGTALAA SAAPHPAAAK AAAAVFNVKD
YGATGNGSTN DSPAINKAVA AANTAGGGIV EFPSGSYKSA NTVHLKSNVT IQLDAGSKVL
GSSAKTYDAA ESNPNDKYQD YGHSHFHDAM FSGDKLSNIG FTGSGTIDGG GNLITGNPGA
GQADKILSLT RCTNLTLSGI TLTRGGHFGA LINGCDGVVS DHLTIATSSD RDGWNIISTT
HVTITNANIS SNDDALVFKS DWALGQTLPS GHVTVTNSTL QAKCCNALMF GSETCGSFTD
YRFQQITILG AGKSGLGIVS MDGADISDVH YQDVTMTGVH SPIMEKIGTR LRCGGSPKVG
HISNVTFTNV TGTGVASTDY SPTIWGADSS HQVSDETFTN VNLTVPGGHG TMSTGVPSDN
GDYNPNSIGT RPAYGWYLHN VSGIHFTGGS VKVAKTDGRP AVIANAGSAI TFDGLTAQTG
SSSPFDVGFQ NITGYCLSNS HNTSGGALRV SASGSTQSCG SSATRYEAEN ATLSTGDTVA
TNHTGFSGSG FVDTTNAVGA YVEWTVTAPA AGTYTATVGY ANGTTTDRPM DVAVNGTTAD
AAASFPTTAS WNTWAGKAFS VPLNAGANTI RVAASTANGC PNLDYLDLG
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