Gene Caci_3080 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_3080 
Symbol 
ID8334432 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp3385031 
End bp3385468 
Gene Length438 bp 
Protein Length145 aa 
Translation table11 
GC content71% 
IMG OID644956227 
Productputative signal transduction protein with CBS domains 
Protein accessionYP_003113830 
Protein GI256392266 
COG category[T] Signal transduction mechanisms 
COG ID[COG2905] Predicted signal-transduction protein containing cAMP-binding and CBS domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.0313978 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTCACGG TCCGCGATGT GATGACCGAG GCACCCAAGT CGGTGCTGGA ATCGGACAAC 
CTGGTGCATG TGGCCCGGGT GATGCGCGAC GAGGACGTCG GCTGCGTGCC GGTGGTCGAC
GACACCGGGC GCCTGGTCGG GATGCTCACC GACCGCGACC TGGTGGTCGA GGCGATGGCC
GCCAGCGACG ACCCGACGCT GCGCCAGGCC GGGGAGCTGA TGCGCGGCGA CATCCACAGC
GTCGACGCCG ACGCGCCGGT GACGCACGTC GTGGAGACGA TGGGGCGCCA GCGGGTCCGG
CGGCTGCCGG TGGTCGCGGC CGGGAAGCTG GTCGGCGTGG TCGGCGTCGC GGATTTGGCC
AAGAATTTGC CGACCGCGGC GGTCGGCGAG CTGATGGCGC TGATCTCGAA GTCGGGGCAC
AAGGACAAGC TGCCGTAG
 
Protein sequence
MVTVRDVMTE APKSVLESDN LVHVARVMRD EDVGCVPVVD DTGRLVGMLT DRDLVVEAMA 
ASDDPTLRQA GELMRGDIHS VDADAPVTHV VETMGRQRVR RLPVVAAGKL VGVVGVADLA
KNLPTAAVGE LMALISKSGH KDKLP