| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_3067 |
|---|
| Symbol | |
|---|
| ID | 8334419 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 3373483 |
|---|
| End bp | 3374133 |
|---|
| Gene Length | 651 bp |
|---|
| Protein Length | 216 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644956214 |
|---|
| Product | electron transport protein SCO1/SenC |
|---|
| Protein accession | YP_003113817 |
|---|
| Protein GI | 256392253 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1999] Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00232769 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.00529609 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCCGC GGTCCCCCCG GATCGCACGC CTCGTCCCGA TGGCAGCCGC CATCGGGGCG
CTGGCCGTGC TCAGCACCGC CTGCGCCAGC CCGTCCCAGG AGGTCGCGCA GTCCTCCCAG
GTCTCCACGC AGCAGTCCAA GTACAAGGGC ACCGAACTGG CGGTCCCCAC ACCGATCCCG
CCGGTGACCC TCACCGACTT CAACGGCAAG CCCTACGACC TGAAGGCGAA CGCCGCAGGG
AAGCTGACGC TCGTCTACTT CGGCTACACG CACTGCCCGG ACGAGTGCCC GACGACCATG
GCCGACCTGG CTTCGGCGCT GCGCCTGCTG CCGGCGGACA AGGCCTCGAA GGTGCGGGTC
GTGTTCGTCA CCACCGACCC GGACCGGGAC ACCGGCCCGG TCCTGAAGGA CTGGCTGGCC
AAGTTCAACC CCTCCTTCGT CGGCCTGACC GGCACGATCA CGCAGGTCGA CGACACCGCC
AAGCTCGCCG CGACGCCGGT CTCCCCGCCG GTGAAGAACC CCGACGGCAC GATCGAGGTG
GACCACGGCA CCCAGGTCAA CGCCTTCGGC ACCGACGGGC TCGCGCACGT GGTCTGGCTG
TCCGACGTCA CGCCGAAGGA CATCGCCCAC GACATCTCGC TGCTGACGTG A
|
|---|
| Protein sequence | MKPRSPRIAR LVPMAAAIGA LAVLSTACAS PSQEVAQSSQ VSTQQSKYKG TELAVPTPIP
PVTLTDFNGK PYDLKANAAG KLTLVYFGYT HCPDECPTTM ADLASALRLL PADKASKVRV
VFVTTDPDRD TGPVLKDWLA KFNPSFVGLT GTITQVDDTA KLAATPVSPP VKNPDGTIEV
DHGTQVNAFG TDGLAHVVWL SDVTPKDIAH DISLLT
|
|---|
| |