Gene Caci_2896 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_2896 
Symbol 
ID8334246 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp3285479 
End bp3286021 
Gene Length543 bp 
Protein Length180 aa 
Translation table11 
GC content67% 
IMG OID644956041 
Productputative transcriptional regulator, GntR family 
Protein accessionYP_003113646 
Protein GI256392082 
COG category[K] Transcription 
COG ID[COG2188] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.407099 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.176429 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACCGACT TTGAGCCGAT CTTCCGTGAC GCCAACGCCC GCCTGTCCGC CGAGCCGCGC 
ACCGCAGGCA AGTCCGTATG GTCCGCCGAT GCCGGCGACC GCCAGTTTGA GGTTCTCGAG
TTGGCCGTCA CCTATGCAGA AGACGCGGGA GACGAAGACG CCGCCGATCT CGGCAGGAAC
GCGATCGTCC GTGACCGCGT CTACGCGGTG GACGGCAAGC GCGTCTGCTG GGCCCGTTCC
TACCTGCCGG CGAAGCTCGC CGAGGGCACG CCGATCGGAG GCTTGAACAC CGGCCCCGGT
GGCGTCCCGG CGCGGCTGGC TGAACTCGGG CACGAGCTGG TTTCGTTTTC CGAGGACGTT
GAGTTCGTTG AGCGTGAGAA CGTGACTGCC GATGAGCGGG ACAGGCTCGG CATCGACGAC
ATGACTGCGG TGGTGCGGAT TGTGCGGCGC GGCATCGACG CATCCGGGCA GGTGGTTAAG
GTGTCGGACA TGCGGCTGGT TGCCGGCGCG TATCGGTTCC GCTGGGCCTG GACGAACCGC
TGA
 
Protein sequence
MTDFEPIFRD ANARLSAEPR TAGKSVWSAD AGDRQFEVLE LAVTYAEDAG DEDAADLGRN 
AIVRDRVYAV DGKRVCWARS YLPAKLAEGT PIGGLNTGPG GVPARLAELG HELVSFSEDV
EFVERENVTA DERDRLGIDD MTAVVRIVRR GIDASGQVVK VSDMRLVAGA YRFRWAWTNR