| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_2890 |
|---|
| Symbol | |
|---|
| ID | 8334240 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 3280625 |
|---|
| End bp | 3281398 |
|---|
| Gene Length | 774 bp |
|---|
| Protein Length | 257 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 644956035 |
|---|
| Product | transcriptional regulator, GntR family |
|---|
| Protein accession | YP_003113640 |
|---|
| Protein GI | 256392076 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2188] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.563628 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.129361 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACGGACG ACAGCTATAG CGACCCCCGA CCGCGACGCG AGCAGATCGC GGCGGACATT
CGGGCGGTGA TCCTTGCGGG CAAGTACCCG GACATGCTCC CCGGAGTCAA GATCCTGGCT
GAGTGGTACG ACACGACGGT AAACACCGTT CAGCACGCGC TGGAGATCTT GAAGGGTGAA
GGCCTGATTC GTTCGGAGAA AGGTAAGGGC ACCGAGGTGA TTGCTGAACC GAGAACCCCC
GTTCTCGCCG ATCCAGACCC GCAGCTCGAC ATCTACCGCT ACGACACGCT CGCCGTTGAC
GTCCTTCAGG TTGCAGTACC CGAGCGCGCC CGGCAGGAGC GCATGGAAGA AGCCGACGCC
GAAACGATTC CAGGAGATGT TGCCAAGCTG CTTGGGCTGG GGCCCAACGG CCAAGCCGTT
CGCCGCTTTA GAGTTATGCG CGTCCGAGAA ACGGACGAAC CTGTCGAGGT CGACTGGTCC
TACTACCCGA TCGAGATTGC GGCAGGTACC CGCATTGCCC TGCCGGGGTC GATCAAGGGC
GGCGTGCAGA AGATCCTTGA TGGGATGCAC TTGCCCGCAG TCGACTACGA GGACCGAGTC
TCGACCCGCG TTCCCACGAC ACAAGAGCTC GAACTGCTGC ACCTGCCGCC GTTCGTTTCG
GTGCTCCAGA CGCTCCGCAT CGTGTGGTCG CGCGGCGGGA AGCCCATCGA AGCAACCGTC
ATGGTGAAGG GCGGTCACCG GTTCGAGCTG CTGTATCGCA GGTCCACGCA CTGA
|
|---|
| Protein sequence | MTDDSYSDPR PRREQIAADI RAVILAGKYP DMLPGVKILA EWYDTTVNTV QHALEILKGE
GLIRSEKGKG TEVIAEPRTP VLADPDPQLD IYRYDTLAVD VLQVAVPERA RQERMEEADA
ETIPGDVAKL LGLGPNGQAV RRFRVMRVRE TDEPVEVDWS YYPIEIAAGT RIALPGSIKG
GVQKILDGMH LPAVDYEDRV STRVPTTQEL ELLHLPPFVS VLQTLRIVWS RGGKPIEATV
MVKGGHRFEL LYRRSTH
|
|---|
| |