| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_2632 |
|---|
| Symbol | |
|---|
| ID | 8333981 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 3016144 |
|---|
| End bp | 3017427 |
|---|
| Gene Length | 1284 bp |
|---|
| Protein Length | 427 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644955784 |
|---|
| Product | putative PAS/PAC sensor protein |
|---|
| Protein accession | YP_003113390 |
|---|
| Protein GI | 256391826 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCTCCC CCGGCTCCCC TCCACCCGGG CCCGCGTCCG GCGTCGGCGA CGGACTCGGG
GCGCCGCGGG AGGACAGCGC CGAGGACCTG TACGAGAACG CGCCGTGCGG CTACCTGTCG
ACCGCGATGG ACGGCACCAT CGTGAAGATC AACGCCACCC TGCTGGGCTG GCTCGCGCGC
GACCGGGACG AGGTGGTGGG CCGGCGCCGG TTCACCGACC TGCTGACCGT CGGCGGGAAG
CTCTACCACG AGACCCACTT CGCGCCGCTG CTCCAGATGC AGGGCGAGGT CGGCGGGGTC
GCGCTGGAGT TGAAGACGGC GCGCGGCGAC CGCCTGCCGG TGCTGGTCAC GTCCAAGGTC
AAGACCGGGC CGGACGGCGA GCCGCTGCTG ATCCGCACCG TGGTCTTCGA CGCCCACGAC
CGGCGAAGCT ACGAGACCGA GCTGCTGCGG GCGCGCCAGG AGGCCGAGGA CGCGCGCGAG
GCGGCGGAGA AGGCCACAGC CCTGGTCGAG ACCGAGCGCG TCCGTCTCCA GCAGCTTTCC
ACGACGTTGC AGACGACGCT GCTGCCTCCG GACCTGCCTC CCGTGCCGGG GGTGGAAGTC
GCGGCTGACT ACCACGTCGC CTCGGTCGAC GAGGTGGGCG GCGACTTCTA CGACTTGTTC
CGTCTCAGCG GCGACGCCTG GGGTTTCTTC CTGGGGGATG TGTGCGGCAA AGGAGTGATC
GCCGCGGCGA CCACATCCCT CATCCGCTAC ACGCTGCGCG CCACGGCTCC TCACGTCGGG
AGCCTGCCGG CGATCCTGGA GAACCTCAAC AACGTACTGA ACCAGCGCTA CGGCAGTGAC
CTGCGCTACT GCACCATCGT GTTCGGCGTG CTCGTGCCCG ACACGTCCGG CCCGGGGTAC
TCGGTCACCC TGGCCAGCGG CGGGCATCCG CCGGCTCTGC TGCTCGGCGC CGACGGCAAG
GCCCGGTATC TGCCCACGCC CGGCGGGCAG TTCATCGGGG TACTCGCACA GGTGGACATC
GCCACCACCA CGATCCGCAT GGGACCCGGC GACACCCTGC TGCTGTACAC CGACGGTCTG
ACCGAGGCCC ACACGATCCG GCCGGACCGC TACGGCGAGG AGGCTCTGCT GGACTTCGCC
GCCGCCCTCG CGCCGACCAG CGCGCCGGTC CTCGTCGAGG CCGTGTCCTC GCTGCTGGAC
GGGTTCGGCG ACGGCGTGAC CGACGACGCC GCGATCCTCG CGCTGAGCAT CCCCGCAGAC
GGGCCGAAGC CGCCGTCGTC ATGA
|
|---|
| Protein sequence | MGSPGSPPPG PASGVGDGLG APREDSAEDL YENAPCGYLS TAMDGTIVKI NATLLGWLAR
DRDEVVGRRR FTDLLTVGGK LYHETHFAPL LQMQGEVGGV ALELKTARGD RLPVLVTSKV
KTGPDGEPLL IRTVVFDAHD RRSYETELLR ARQEAEDARE AAEKATALVE TERVRLQQLS
TTLQTTLLPP DLPPVPGVEV AADYHVASVD EVGGDFYDLF RLSGDAWGFF LGDVCGKGVI
AAATTSLIRY TLRATAPHVG SLPAILENLN NVLNQRYGSD LRYCTIVFGV LVPDTSGPGY
SVTLASGGHP PALLLGADGK ARYLPTPGGQ FIGVLAQVDI ATTTIRMGPG DTLLLYTDGL
TEAHTIRPDR YGEEALLDFA AALAPTSAPV LVEAVSSLLD GFGDGVTDDA AILALSIPAD
GPKPPSS
|
|---|
| |